RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070024969	Gene ID	100462726	Accession	-
Symbol	BCLAF1	Alias	-	Full Name	BCL2 associated transcription factor 1
Status	Confidence	Length	47559 bases	Strand	Minus strand
Position	1 : 253272732 - 253320290	RNA binding domain	THRAP3_BCLAF1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070042259	THRAP3_BCLAF1	PF15440	1.1e-155	1
ENSSSCP00070042241	THRAP3_BCLAF1	PF15440	5.2e-155	1
ENSSSCP00070042239	THRAP3_BCLAF1	PF15440	8.4e-155	1
ENSSSCP00070042152	THRAP3_BCLAF1	PF15440	8.9e-155	1
ENSSSCP00070042228	THRAP3_BCLAF1	PF15440	9.2e-155	1
ENSSSCP00070042237	THRAP3_BCLAF1	PF15440	6e-134	1
ENSSSCP00070042261	THRAP3_BCLAF1	PF15440	7.1e-134	1
ENSSSCP00070042283	THRAP3_BCLAF1	PF15440	2e-133	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
BCLAF1-201	ENSSSCT00070049907	2763	921aa	ENSSSCP00070042152
BCLAF1-202	ENSSSCT00070049995	6722	740aa	ENSSSCP00070042228
BCLAF1-203	ENSSSCT00070050007	8012	691aa	ENSSSCP00070042237
BCLAF1-204	ENSSSCT00070050010	2948	872aa	ENSSSCP00070042239
BCLAF1-205	ENSSSCT00070050012	2667	850aa	ENSSSCP00070042241
BCLAF1-206	ENSSSCT00070050031	2742	752aa	ENSSSCP00070042259
BCLAF1-207	ENSSSCT00070050033	2226	703aa	ENSSSCP00070042261
BCLAF1-208	ENSSSCT00070050055	3184	689aa	ENSSSCP00070042283

Gene Model

Click here to download ENSSSCG00070024969's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070024969's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070024969	sus_scrofa_usmarc	ENSSSCP00070037499	38.5445	21.159	sus_scrofa_usmarc	ENSSSCP00070042152	31.0532	17.0467
ENSSSCG00070024969	sus_scrofa_usmarc	ENSSSCP00070046363	54.2798	39.666	sus_scrofa_usmarc	ENSSSCP00070042152	56.4604	41.2595

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070024969	sus_scrofa_usmarc	ENSSSCP00070042152	94.4625	94.4625	sus_scrofa	ENSSSCP00000032944	100	100
ENSSSCG00070024969	sus_scrofa_usmarc	ENSSSCP00070042152	99.5657	99.0228	equus_caballus	ENSECAP00000023559	98.9212	98.3819

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression