RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070023891	Gene ID	396689	Accession	-
Symbol	DCPS	Alias	-	Full Name	decapping enzyme, scavenger
Status	Confidence	Length	49264 bases	Strand	Minus strand
Position	9 : 85136395 - 85185658	RNA binding domain	DcpS , DcpS_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070040226	DcpS	PF05652	3.7e-18	1
ENSSSCP00070040226	DcpS_C	PF11969	5e-31	2
ENSSSCP00070040228	DcpS	PF05652	3.7e-18	1
ENSSSCP00070040228	DcpS_C	PF11969	5e-31	2
ENSSSCP00070040232	DcpS	PF05652	3.7e-18	1
ENSSSCP00070040232	DcpS_C	PF11969	5e-31	2
ENSSSCP00070040239	DcpS_C	PF11969	2.6e-31	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DCPS-203	ENSSSCT00070047666	1967	337aa	ENSSSCP00070040226
DCPS-204	ENSSSCT00070047668	1752	337aa	ENSSSCP00070040228
DCPS-202	ENSSSCT00070047672	1996	337aa	ENSSSCP00070040232
DCPS-201	ENSSSCT00070047679	744	247aa	ENSSSCP00070040239

Gene Model

Click here to download ENSSSCG00070023891's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070023891's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070023891

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa	ENSSSCP00000016152	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	96.1424	92.8783	equus_caballus	ENSECAP00000010836	85.2632	82.3684
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_jinhua	ENSSSCP00060003732	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	31.454	30.5638	sus_scrofa_meishan	ENSSSCP00040004104	98.1481	95.3704
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_berkshire	ENSSSCP00065027226	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_bamei	ENSSSCP00050034966	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_landrace	ENSSSCP00045036490	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	94.9555	91.3947	ovis_aries_rambouillet	ENSOARP00020009561	94.9555	91.3947
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_rongchang	ENSSSCP00030023004	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_pietrain	ENSSSCP00055030053	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_hampshire	ENSSSCP00035020760	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_wuzhishan	ENSSSCP00005000980	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_tibetan	ENSSSCP00015024969	100	100
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	95.549	92.5816	bos_taurus	ENSBTAP00000003732	95.549	92.5816
ENSSSCG00070023891	sus_scrofa_usmarc	ENSSSCP00070040232	100	100	sus_scrofa_largewhite	ENSSSCP00025011642	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression