RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070022514	Gene ID	102162486	Accession	-
Symbol	FMC1-LUC7L2	Alias	-	Full Name	putative RNA-binding protein Luc7-like 2
Status	Confidence	Length	67014 bases	Strand	Minus strand
Position	18 : 10189344 - 10256357	RNA binding domain	LUC7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070037772	LUC7	PF03194	2.2e-75	1
ENSSSCP00070037761	LUC7	PF03194	3.7e-75	1
ENSSSCP00070037776	LUC7	PF03194	3.7e-68	1
ENSSSCP00070037798	LUC7	PF03194	3.8e-68	1
ENSSSCP00070037795	LUC7	PF03194	4.7e-68	1
ENSSSCP00070037801	LUC7	PF03194	7.1e-68	1
ENSSSCP00070037811	LUC7	PF03194	1.8e-67	1
ENSSSCP00070037786	LUC7	PF03194	7.3e-54	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FMC1-LUC7L2-201	ENSSSCT00070044809	2478	392aa	ENSSSCP00070037761
FMC1-LUC7L2-206	ENSSSCT00070044821	2046	328aa	ENSSSCP00070037772
FMC1-LUC7L2-204	ENSSSCT00070044827	2080	408aa	ENSSSCP00070037776
FMC1-LUC7L2-205	ENSSSCT00070044838	2009	339aa	ENSSSCP00070037786
FMC1-LUC7L2-203	ENSSSCT00070044852	1932	374aa	ENSSSCP00070037795
FMC1-LUC7L2-202	ENSSSCT00070044856	1977	389aa	ENSSSCP00070037798
FMC1-LUC7L2-208	ENSSSCT00070044869	1140	379aa	ENSSSCP00070037801
FMC1-LUC7L2-207	ENSSSCT00070044881	1080	359aa	ENSSSCP00070037811

Gene Model

Click here to download ENSSSCG00070022514's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070022514's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070029887	66.6667	56.2092	sus_scrofa_usmarc	ENSSSCP00070037776	75	63.2353
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070038889	34.6565	21.374	sus_scrofa_usmarc	ENSSSCP00070037776	55.6373	34.3137

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa	ENSSSCP00000060258	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	99.5098	98.7745	equus_caballus	ENSECAP00000075446	89.6247	88.9625
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_jinhua	ENSSSCP00060021994	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_meishan	ENSSSCP00040026988	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_berkshire	ENSSSCP00065022081	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_bamei	ENSSSCP00050018329	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_landrace	ENSSSCP00045036064	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	ovis_aries_rambouillet	ENSOARP00020005545	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_rongchang	ENSSSCP00030030634	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_pietrain	ENSSSCP00055008637	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_hampshire	ENSSSCP00035026589	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_wuzhishan	ENSSSCP00005007884	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_tibetan	ENSSSCP00015009144	95.9184	95.4082
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.8922	92.402	bos_taurus	ENSBTAP00000023628	99.4751	98.9501
ENSSSCG00070022514	sus_scrofa_usmarc	ENSSSCP00070037776	92.1569	91.6667	sus_scrofa_largewhite	ENSSSCP00025020467	95.9184	95.4082

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression