RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070022363	Gene ID	100624439	Accession	-
Symbol	BCLAF3	Alias	-	Full Name	BCLAF1 and THRAP3 family member 3
Status	Confidence	Length	59737 bases	Strand	Minus strand
Position	X : 17122950 - 17182686	RNA binding domain	THRAP3_BCLAF1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070037515	THRAP3_BCLAF1	PF15440	4.7e-211	1
ENSSSCP00070037493	THRAP3_BCLAF1	PF15440	4.9e-211	1
ENSSSCP00070037499	THRAP3_BCLAF1	PF15440	2.1e-203	1
ENSSSCP00070037499	THRAP3_BCLAF1	PF15440	2.1e-203	2
ENSSSCP00070037508	THRAP3_BCLAF1	PF15440	5.2e-190	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
BCLAF3-201	ENSSSCT00070044500	3889	713aa	ENSSSCP00070037493
BCLAF3-202	ENSSSCT00070044507	2263	742aa	ENSSSCP00070037499
BCLAF3-203	ENSSSCT00070044517	2017	660aa	ENSSSCP00070037508
BCLAF3-204	ENSSSCT00070044523	2174	705aa	ENSSSCP00070037515

Gene Model

Click here to download ENSSSCG00070022363's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070022363's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070042152	31.0532	17.0467	sus_scrofa_usmarc	ENSSSCP00070037499	38.5445	21.159
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070046363	29.7495	16.1795	sus_scrofa_usmarc	ENSSSCP00070037499	38.4097	20.8895

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	96.0916	96.0916	sus_scrofa	ENSSSCP00000053524	100	100
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	38.6792	21.2938	equus_caballus	ENSECAP00000023559	30.9601	17.0442
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	96.0916	96.0916	sus_scrofa_jinhua	ENSSSCP00060045666	98.4807	98.4807
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	100	100	sus_scrofa_meishan	ENSSSCP00040015501	100	100
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	100	100	sus_scrofa_berkshire	ENSSSCP00065026559	100	100
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	100	100	sus_scrofa_bamei	ENSSSCP00050024347	100	100
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	96.0916	96.0916	sus_scrofa_landrace	ENSSSCP00045005290	98.4807	98.4807
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	96.0916	96.0916	sus_scrofa_rongchang	ENSSSCP00030045810	98.4807	98.4807
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	100	100	sus_scrofa_pietrain	ENSSSCP00055030900	100	100
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	96.0916	96.0916	sus_scrofa_hampshire	ENSSSCP00035026463	98.4807	98.4807
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	94.7439	94.7439	sus_scrofa_wuzhishan	ENSSSCP00005037445	100	100
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	100	100	sus_scrofa_tibetan	ENSSSCP00015043612	100	100
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	82.8841	76.9542	bos_taurus	ENSBTAP00000060032	86.6197	80.4225
ENSSSCG00070022363	sus_scrofa_usmarc	ENSSSCP00070037499	96.0916	96.0916	sus_scrofa_largewhite	ENSSSCP00025042975	98.4807	98.4807

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression