RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00070020154	Gene ID	100626826	Accession	-
Symbol	LSM14B	Alias	-	Full Name	LSM family member 14B
Status	Confidence	Length	11974 bases	Strand	Plus strand
Position	17 : 62235785 - 62247758	RNA binding domain	LSM14 , SM-ATX , FDF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070033512	LSM14	PF12701	2.9e-30	1
ENSSSCP00070033512	SM-ATX	PF14438	1.6e-08	2
ENSSSCP00070033491	LSM14	PF12701	1.3e-29	1
ENSSSCP00070033491	SM-ATX	PF14438	6.8e-08	2
ENSSSCP00070033491	FDF	PF09532	1.4e-11	3
ENSSSCP00070033501	LSM14	PF12701	1.9e-29	1
ENSSSCP00070033501	SM-ATX	PF14438	1.2e-07	2
ENSSSCP00070033501	FDF	PF09532	8.3e-07	3
ENSSSCP00070033496	LSM14	PF12701	2e-29	1
ENSSSCP00070033496	SM-ATX	PF14438	1.2e-07	2
ENSSSCP00070033496	FDF	PF09532	8.8e-07	3
ENSSSCP00070033487	LSM14	PF12701	3.6e-11	1
ENSSSCP00070033487	FDF	PF09532	8e-07	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
LSM14B-201	ENSSSCT00070039977	2405	696aa	ENSSSCP00070033487
LSM14B-204	ENSSSCT00070039982	2649	551aa	ENSSSCP00070033491
LSM14B-202	ENSSSCT00070039987	2248	745aa	ENSSSCP00070033496
LSM14B-203	ENSSSCT00070039992	2131	706aa	ENSSSCP00070033501
LSM14B-205	ENSSSCT00070040004	666	221aa	ENSSSCP00070033512

Gene Model

Click here to download ENSSSCG00070020154's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070020154's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070020154

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	48.0537	46.0403	sus_scrofa	ENSSSCP00000053189	84.434	80.8962
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	45.6376	43.0872	equus_caballus	ENSECAP00000035118	80.1887	75.7076
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	39.0604	35.9732	sus_scrofa_jinhua	ENSSSCP00060016357	61.0063	56.1845
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	48.0537	46.0403	sus_scrofa_meishan	ENSSSCP00040006674	84.434	80.8962
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	58.5235	56.5101	sus_scrofa_berkshire	ENSSSCP00065012684	86.8526	83.8645
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	48.0537	46.0403	sus_scrofa_bamei	ENSSSCP00050042702	84.434	80.8962
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	58.3893	56.3758	sus_scrofa_landrace	ENSSSCP00045000911	86.6534	83.6653
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	18.5235	15.7047	ovis_aries_rambouillet	ENSOARP00020031763	60	50.8696
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	40.5369	37.8523	ovis_aries_rambouillet	ENSOARP00020009041	78.4416	73.2467
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	58.5235	56.5101	sus_scrofa_rongchang	ENSSSCP00030018515	86.8526	83.8645
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	48.0537	46.0403	sus_scrofa_pietrain	ENSSSCP00055010611	84.434	80.8962
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	48.0537	46.0403	sus_scrofa_hampshire	ENSSSCP00035002384	84.434	80.8962
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	30.3356	29.1275	sus_scrofa_wuzhishan	ENSSSCP00005033355	81.295	78.0576
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	45.3691	42.5503	bos_taurus	ENSBTAP00000028723	79.717	74.7642
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	17.1812	14.2282	bos_taurus	ENSBTAP00000057304	58.1818	48.1818
ENSSSCG00070020154	sus_scrofa_usmarc	ENSSSCP00070033496	48.0537	46.0403	sus_scrofa_largewhite	ENSSSCP00025040674	84.434	80.8962

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression