RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070019243	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	5885 bases	Strand	Plus strand
Position	18 : 6081428 - 6087312	RNA binding domain	RAP , FAST_2 , FAST_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070031887	RAP	PF08373	7e-07	1
ENSSSCP00070031887	FAST_2	PF08368	5e-17	2
ENSSSCP00070031887	FAST_1	PF06743	1.1e-14	3
ENSSSCP00070031840	RAP	PF08373	7.4e-07	1
ENSSSCP00070031840	FAST_2	PF08368	5.5e-17	2
ENSSSCP00070031840	FAST_1	PF06743	1.2e-14	3
ENSSSCP00070031814	RAP	PF08373	7.6e-07	1
ENSSSCP00070031814	FAST_2	PF08368	5.7e-17	2
ENSSSCP00070031814	FAST_1	PF06743	1.1e-14	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070038027	2470	631aa	ENSSSCP00070031814
-	ENSSSCT00070038056	1869	622aa	ENSSSCP00070031840
-	ENSSSCT00070038104	3733	597aa	ENSSSCP00070031887

Gene Model

Click here to download ENSSSCG00070019243's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070019243's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070025262	30.7692	17.1474	sus_scrofa_usmarc	ENSSSCP00070031814	30.4279	16.9572
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070016823	29.9094	17.8248	sus_scrofa_usmarc	ENSSSCP00070031814	31.3788	18.7005
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070034729	25.3991	14.0784	sus_scrofa_usmarc	ENSSSCP00070031814	27.7338	15.3724
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070042204	23.8038	11.9617	sus_scrofa_usmarc	ENSSSCP00070031814	31.5372	15.8479

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	85.8954	85.8954	sus_scrofa	ENSSSCP00000023177	100	100
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	82.7258	81.2995	equus_caballus	ENSECAP00000045687	94.7368	93.1034
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	82.8843	82.4089	sus_scrofa_jinhua	ENSSSCP00060030745	94.4043	93.8628
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	91.6006	90.3328	sus_scrofa_berkshire	ENSSSCP00065022238	85	83.8235
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	91.7591	90.0158	sus_scrofa_bamei	ENSSSCP00050024936	85.1471	83.5294
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	91.7591	90.1743	sus_scrofa_landrace	ENSSSCP00045014251	85.1471	83.6765
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	76.0697	72.2662	ovis_aries_rambouillet	ENSOARP00020018988	76.6773	72.8435
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	80.5071	80.3487	sus_scrofa_rongchang	ENSSSCP00030005510	93.5543	93.3702
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	91.9176	90.6498	sus_scrofa_pietrain	ENSSSCP00055026542	85.2941	84.1176
ENSSSCG00070019243	sus_scrofa_usmarc	ENSSSCP00070031814	81.141	79.3978	bos_taurus	ENSBTAP00000041377	94.4649	92.4354

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression