RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070018090	Gene ID	100737615	Accession	-
Symbol	LUC7L	Alias	-	Full Name	LUC7 like
Status	Confidence	Length	30567 bases	Strand	Minus strand
Position	NPJO01000029.1 : 184590 - 215156	RNA binding domain	LUC7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070029887	LUC7	PF03194	2.5e-74	1
ENSSSCP00070029916	LUC7	PF03194	2.8e-68	1
ENSSSCP00070029904	LUC7	PF03194	1.3e-53	1
ENSSSCP00070029910	LUC7	PF03194	1.3e-53	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
LUC7L-202	ENSSSCT00070035763	3716	459aa	ENSSSCP00070029887
LUC7L-201	ENSSSCT00070035783	4073	318aa	ENSSSCP00070029904
LUC7L-203	ENSSSCT00070035794	1357	318aa	ENSSSCP00070029910
LUC7L-204	ENSSSCT00070035801	1626	354aa	ENSSSCP00070029916
LUC7L-205	ENSSSCT00070035815	168	55aa	ENSSSCP00070029930

Gene Model

Click here to download ENSSSCG00070018090's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070018090's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070037776	75	63.2353	sus_scrofa_usmarc	ENSSSCP00070029887	66.6667	56.2092
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070038889	35.7252	21.9847	sus_scrofa_usmarc	ENSSSCP00070029887	50.9804	31.3725

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	69.281	69.281	sus_scrofa	ENSSSCP00000041412	100	100
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	74.0741	71.8954	equus_caballus	ENSECAP00000001691	78.341	76.0369
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	80.8279	80.8279	sus_scrofa_jinhua	ENSSSCP00060037346	100	100
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	100	100	sus_scrofa_meishan	ENSSSCP00040043179	99.5662	99.5662
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	100	100	sus_scrofa_berkshire	ENSSSCP00065036605	99.7826	99.7826
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	100	100	sus_scrofa_bamei	ENSSSCP00050019952	99.5662	99.5662
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	100	100	sus_scrofa_landrace	ENSSSCP00045023988	100	100
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	79.5207	78.6492	ovis_aries_rambouillet	ENSOARP00020020207	98.3828	97.3046
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	100	100	sus_scrofa_rongchang	ENSSSCP00030038060	99.5662	99.5662
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	80.8279	80.8279	sus_scrofa_pietrain	ENSSSCP00055006493	100	100
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	80.8279	80.8279	sus_scrofa_hampshire	ENSSSCP00035040412	100	100
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	76.6885	76.6885	sus_scrofa_wuzhishan	ENSSSCP00005040787	99.435	99.435
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	80.8279	80.8279	sus_scrofa_tibetan	ENSSSCP00015017861	100	100
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	85.8388	83.6601	bos_taurus	ENSBTAP00000058074	74.3396	72.4528
ENSSSCG00070018090	sus_scrofa_usmarc	ENSSSCP00070029887	100	100	sus_scrofa_largewhite	ENSSSCP00025037584	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression