RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00070017964	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	4410 bases	Strand	Minus strand
Position	13 : 36254849 - 36259258	RNA binding domain	SMN
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070029628	SMN	PF06003	4.8e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070035459	231	76aa	ENSSSCP00070029628

Gene Model

Click here to download ENSSSCG00070017964's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070017964's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070048827	36.6667	30.8333	sus_scrofa_usmarc	ENSSSCP00070029628	57.8947	48.6842

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	93.4211	93.4211	sus_scrofa_jinhua	ENSSSCP00060025927	51.0791	51.0791
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	51.3158	51.3158	sus_scrofa_meishan	ENSSSCP00040028067	46.988	46.988
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	68.4211	67.1053	sus_scrofa_berkshire	ENSSSCP00065006179	37.6812	36.9565
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	93.4211	93.4211	sus_scrofa_bamei	ENSSSCP00050016249	51.0791	51.0791
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	96.0526	94.7368	sus_scrofa_landrace	ENSSSCP00045003304	51.4085	50.7042
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	93.4211	93.4211	sus_scrofa_rongchang	ENSSSCP00030046873	51.0791	51.0791
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	69.7368	67.1053	sus_scrofa_pietrain	ENSSSCP00055024168	46.9027	45.1327
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	93.4211	93.4211	sus_scrofa_hampshire	ENSSSCP00035027504	51.0791	51.0791
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	93.4211	93.4211	sus_scrofa_tibetan	ENSSSCP00015041520	51.0791	51.0791
ENSSSCG00070017964	sus_scrofa_usmarc	ENSSSCP00070029628	69.7368	68.4211	sus_scrofa_largewhite	ENSSSCP00025038208	38.4058	37.6812

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression