RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070017448	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	46103 bases	Strand	Minus strand
Position	18 : 51642754 - 51688856	RNA binding domain	Ribosomal_L32p
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070028777	Ribosomal_L32p	PF01783	1.2e-10	1
ENSSSCP00070028769	Ribosomal_L32p	PF01783	3.4e-10	1
ENSSSCP00070028786	Ribosomal_L32p	PF01783	3.8e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070034434	1128	212aa	ENSSSCP00070028763
-	ENSSSCT00070034445	1449	196aa	ENSSSCP00070028769
-	ENSSSCT00070034455	845	119aa	ENSSSCP00070028777
-	ENSSSCT00070034464	621	206aa	ENSSSCP00070028786

Gene Model

Click here to download ENSSSCG00070017448's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070017448's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070024711	68.1529	61.7834	sus_scrofa_usmarc	ENSSSCP00070028763	50.4717	45.7547

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	55.1887	48.5849	equus_caballus	ENSECAP00000007005	59.0909	52.0202
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	42.9245	34.9057	equus_caballus	ENSECAP00000089894	50.2762	40.884
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	99.5283	99.5283	sus_scrofa_jinhua	ENSSSCP00060013913	99.5283	99.5283
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	76.8868	75.9434	sus_scrofa_meishan	ENSSSCP00040004806	78.3654	77.4038
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	75.9434	75.4717	sus_scrofa_bamei	ENSSSCP00050014175	67.364	66.9456
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	51.8868	44.3396	ovis_aries_rambouillet	ENSOARP00020012752	58.5106	50
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	75.9434	75.4717	sus_scrofa_rongchang	ENSSSCP00030021274	67.364	66.9456
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	76.8868	75.9434	sus_scrofa_wuzhishan	ENSSSCP00005016625	78.3654	77.4038
ENSSSCG00070017448	sus_scrofa_usmarc	ENSSSCP00070028763	51.8868	43.8679	bos_taurus	ENSBTAP00000001313	58.5106	49.4681

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression