RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070016946	Gene ID	100170853	Accession	-
Symbol	SMN1	Alias	-	Full Name	survival of motor neuron 1, telomeric
Status	Confidence	Length	93390 bases	Strand	Plus strand
Position	16 : 32804240 - 32897629	RNA binding domain	SMN
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070027957	SMN	PF06003	3.1e-106	1
ENSSSCP00070027973	SMN	PF06003	3.9e-102	1
ENSSSCP00070028002	SMN	PF06003	4.6e-101	1
ENSSSCP00070027991	SMN	PF06003	5.6e-93	1
ENSSSCP00070027991	SMN	PF06003	5.6e-93	2
ENSSSCP00070027966	SMN	PF06003	1.4e-85	1
ENSSSCP00070027995	SMN	PF06003	6.4e-58	1
ENSSSCP00070027995	SMN	PF06003	6.4e-58	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
SMN1-201	ENSSSCT00070033467	1310	293aa	ENSSSCP00070027957
SMN1-202	ENSSSCT00070033479	1195	269aa	ENSSSCP00070027966
SMN1-205	ENSSSCT00070033487	1202	290aa	ENSSSCP00070027973
SMN1-203	ENSSSCT00070033512	789	262aa	ENSSSCP00070027991
SMN1-204	ENSSSCT00070033517	681	226aa	ENSSSCP00070027995
SMN1-206	ENSSSCT00070033525	816	271aa	ENSSSCP00070028002

Gene Model

Click here to download ENSSSCG00070016946's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070016946's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070014171	36.1345	21.0084	sus_scrofa_usmarc	ENSSSCP00070027957	29.3515	17.0648

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	52.901	51.1945	sus_scrofa	ENSSSCP00000032425	87.0787	84.2697
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	89.7611	84.6416	equus_caballus	ENSECAP00000078108	81.4241	76.7802
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	94.8805	94.198	sus_scrofa_jinhua	ENSSSCP00060040405	92.6667	92
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	94.8805	93.8567	sus_scrofa_meishan	ENSSSCP00040015486	92.6667	91.6667
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	85.6655	82.9352	sus_scrofa_berkshire	ENSSSCP00065041399	83.3887	80.7309
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	94.8805	93.5154	sus_scrofa_bamei	ENSSSCP00050038632	92.6667	91.3333
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	89.0785	87.372	sus_scrofa_landrace	ENSSSCP00045035547	87	85.3333
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	92.4915	86.3481	ovis_aries_rambouillet	ENSOARP00020030619	92.1769	86.0544
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	52.901	49.4881	ovis_aries_rambouillet	ENSOARP00020031723	90.6433	84.7953
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	94.8805	93.5154	sus_scrofa_rongchang	ENSSSCP00030035715	92.6667	91.3333
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	95.5631	95.2218	sus_scrofa_pietrain	ENSSSCP00055035520	93.0233	92.691
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	89.4198	88.3959	sus_scrofa_hampshire	ENSSSCP00035021965	87.3333	86.3333
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	94.5392	94.198	sus_scrofa_wuzhishan	ENSSSCP00005043662	82.1958	81.8991
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	95.5631	95.2218	sus_scrofa_tibetan	ENSSSCP00015007828	93.3333	93
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	87.7133	82.2526	bos_taurus	ENSBTAP00000071442	81.0726	76.0252
ENSSSCG00070016946	sus_scrofa_usmarc	ENSSSCP00070027957	89.0785	88.0546	sus_scrofa_largewhite	ENSSSCP00025022093	86.711	85.7143

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression