RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070016793	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	71212 bases	Strand	Minus strand
Position	12 : 1705379 - 1776590	RNA binding domain	Endonuclease_5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070027648	Endonuclease_5	PF04493	1.7e-65	1
ENSSSCP00070027635	Endonuclease_5	PF04493	2.2e-65	1
ENSSSCP00070027623	Endonuclease_5	PF04493	2.3e-65	1
ENSSSCP00070027640	Endonuclease_5	PF04493	2.5e-61	1
ENSSSCP00070027640	Endonuclease_5	PF04493	2.5e-61	2
ENSSSCP00070027655	Endonuclease_5	PF04493	2.8e-61	1
ENSSSCP00070027655	Endonuclease_5	PF04493	2.8e-61	2
ENSSSCP00070027660	Endonuclease_5	PF04493	6.9e-44	1
ENSSSCP00070027660	Endonuclease_5	PF04493	6.9e-44	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070033072	969	322aa	ENSSSCP00070027623
-	ENSSSCT00070033089	969	322aa	ENSSSCP00070027635
-	ENSSSCT00070033098	912	303aa	ENSSSCP00070027640
-	ENSSSCT00070033107	1361	292aa	ENSSSCP00070027648
-	ENSSSCT00070033115	939	312aa	ENSSSCP00070027655
-	ENSSSCT00070033124	699	233aa	ENSSSCP00070027660

Gene Model

Click here to download ENSSSCG00070016793's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070016793's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070016793

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	81.9876	81.3665	sus_scrofa	ENSSSCP00000080153	95.3069	94.5848
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	78.2609	73.2919	equus_caballus	ENSECAP00000039277	71.7949	67.2365
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	82.2981	81.677	sus_scrofa_jinhua	ENSSSCP00060040984	95.3237	94.6043
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	94.0994	92.8571	sus_scrofa_meishan	ENSSSCP00040024065	88.5965	87.4269
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	84.1615	83.5404	sus_scrofa_berkshire	ENSSSCP00065039478	86.859	86.2179
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	84.1615	83.5404	sus_scrofa_bamei	ENSSSCP00050015854	86.859	86.2179
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	82.2981	81.677	sus_scrofa_landrace	ENSSSCP00045024158	95.3237	94.6043
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	77.0186	70.4969	ovis_aries_rambouillet	ENSOARP00020028252	88.8889	81.362
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	82.2981	81.677	sus_scrofa_rongchang	ENSSSCP00030004041	95.3237	94.6043
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	58.0745	54.6584	sus_scrofa_pietrain	ENSSSCP00055033650	69.7761	65.6716
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	82.2981	81.677	sus_scrofa_hampshire	ENSSSCP00035047866	95.3237	94.6043
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	79.8137	79.8137	sus_scrofa_wuzhishan	ENSSSCP00005036072	99.2278	99.2278
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	58.0745	54.6584	sus_scrofa_tibetan	ENSSSCP00015025917	69.7761	65.6716
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	73.2919	66.4596	bos_taurus	ENSBTAP00000062292	59.1479	53.6341
ENSSSCG00070016793	sus_scrofa_usmarc	ENSSSCP00070027623	82.2981	81.677	sus_scrofa_largewhite	ENSSSCP00025029394	95.3237	94.6043

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression