RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070015606	Gene ID	100524650	Accession	-
Symbol		Alias	-	Full Name	phenylalanyl-tRNA synthetase subunit beta
Status	Confidence	Length	82463 bases	Strand	Plus strand
Position	15 : 19138337 - 19220799	RNA binding domain	B5 , B3_4
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070025692	B5	PF03484	5.5e-17	1
ENSSSCP00070025692	B3_4	PF03483	4.3e-26	2
ENSSSCP00070025670	B5	PF03484	7.4e-17	1
ENSSSCP00070025670	B3_4	PF03483	4.9e-26	2
ENSSSCP00070025687	B5	PF03484	1.1e-16	1
ENSSSCP00070025687	B3_4	PF03483	4.4e-26	2
ENSSSCP00070025703	B5	PF03484	1.8e-16	1
ENSSSCP00070025703	B3_4	PF03483	2.7e-23	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070030778	1946	589aa	ENSSSCP00070025670
-	ENSSSCT00070030795	1838	558aa	ENSSSCP00070025687
-	ENSSSCT00070030800	1770	537aa	ENSSSCP00070025692
-	ENSSSCT00070030812	1716	571aa	ENSSSCP00070025703

Gene Model

Click here to download ENSSSCG00070015606's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070015606's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070046674	98.7132	98.5294	sus_scrofa_usmarc	ENSSSCP00070025670	91.1715	91.0017
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070050645	32.4421	16.5775	sus_scrofa_usmarc	ENSSSCP00070025670	30.8998	15.7895

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070025670	98.3022	93.7182	equus_caballus	ENSECAP00000020920	94.918	90.4918
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070025670	99.6604	99.6604	sus_scrofa_meishan	ENSSSCP00040044162	100	100
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070025670	97.7929	94.9066	ovis_aries_rambouillet	ENSOARP00020023299	97.7929	94.9066
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070025670	99.4907	99.3209	sus_scrofa_wuzhishan	ENSSSCP00005003557	94.9757	94.8136
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070025670	99.6604	99.6604	sus_scrofa_tibetan	ENSSSCP00015018002	95.1378	95.1378
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070025670	93.3786	90.6621	bos_taurus	ENSBTAP00000070732	97.5177	94.6809
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070025670	97.6231	94.9066	bos_taurus	ENSBTAP00000015473	97.6231	94.9066
ENSSSCG00070015606	sus_scrofa_usmarc	ENSSSCP00070025670	99.8302	99.8302	sus_scrofa_largewhite	ENSSSCP00025014754	95.2998	95.2998

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression