RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070015391	Gene ID	397641	Accession	-
Symbol		Alias	-	Full Name	transforming growth factor beta regulator 4
Status	Confidence	Length	11144 bases	Strand	Plus strand
Position	18 : 50161070 - 50172213	RNA binding domain	RAP , FAST_2 , FAST_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070025262	RAP	PF08373	6.7e-11	1
ENSSSCP00070025262	FAST_2	PF08368	7e-25	2
ENSSSCP00070025262	FAST_1	PF06743	1.9e-23	3
ENSSSCP00070025236	FAST_2	PF08368	1e-17	1
ENSSSCP00070025236	FAST_1	PF06743	1.7e-23	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070030249	2375	586aa	ENSSSCP00070025236
-	ENSSSCT00070030276	2606	624aa	ENSSSCP00070025262

Gene Model

Click here to download ENSSSCG00070015391's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070015391's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070031814	30.4279	16.9572	sus_scrofa_usmarc	ENSSSCP00070025262	30.7692	17.1474
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070016823	34.4411	18.2779	sus_scrofa_usmarc	ENSSSCP00070025262	36.5385	19.391
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070034729	32.0755	15.9652	sus_scrofa_usmarc	ENSSSCP00070025262	35.4167	17.6282
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070042204	28.2297	14.1148	sus_scrofa_usmarc	ENSSSCP00070025262	37.8205	18.9103

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.3462	sus_scrofa	ENSSSCP00000017723	90.6646	90.1899
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	77.4038	70.0321	equus_caballus	ENSECAP00000076353	71.5556	64.7407
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.1859	sus_scrofa_jinhua	ENSSSCP00060002144	90.6646	90.0316
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.1859	sus_scrofa_meishan	ENSSSCP00040008759	90.6646	90.0316
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.3462	sus_scrofa_berkshire	ENSSSCP00065009692	90.6646	90.1899
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.1859	sus_scrofa_bamei	ENSSSCP00050022300	90.6646	90.0316
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	82.8526	80.7692	sus_scrofa_landrace	ENSSSCP00045037929	77.7444	75.7895
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	80.1282	72.2756	ovis_aries_rambouillet	ENSOARP00020003445	77.2798	69.7063
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.3462	sus_scrofa_rongchang	ENSSSCP00030019911	90.6646	90.1899
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.3462	sus_scrofa_pietrain	ENSSSCP00055037025	90.6646	90.1899
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.3462	sus_scrofa_hampshire	ENSSSCP00035036156	90.6646	90.1899
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.5064	91.0256	sus_scrofa_wuzhishan	ENSSSCP00005030465	93.6066	93.1148
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.3462	sus_scrofa_tibetan	ENSSSCP00015000967	90.6646	90.1899
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	85.8974	80.609	bos_taurus	ENSBTAP00000013895	84.8101	79.5886
ENSSSCG00070015391	sus_scrofa_usmarc	ENSSSCP00070025262	91.8269	91.3462	sus_scrofa_largewhite	ENSSSCP00025003844	90.6646	90.1899

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression