RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070015117	Gene ID	106509205	Accession	-
Symbol	NCBP1	Alias	-	Full Name	nuclear cap binding protein subunit 1
Status	Confidence	Length	167228 bases	Strand	Minus strand
Position	1 : 42342975 - 42510202	RNA binding domain	MIF4G_like , MIF4G_like_2 , MIF4G
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070026393	MIF4G_like	PF09088	1.7e-36	1
ENSSSCP00070026393	MIF4G_like_2	PF09090	1.2e-87	2
ENSSSCP00070026393	MIF4G	PF02854	2e-27	3
ENSSSCP00070026123	MIF4G_like	PF09088	2.2e-36	1
ENSSSCP00070026123	MIF4G_like_2	PF09090	1.2e-87	2
ENSSSCP00070026123	MIF4G	PF02854	5.7e-30	3
ENSSSCP00070024887	MIF4G_like	PF09088	2.5e-36	1
ENSSSCP00070024887	MIF4G_like_2	PF09090	1.2e-87	2
ENSSSCP00070024887	MIF4G	PF02854	1.5e-30	3
ENSSSCP00070025512	MIF4G_like	PF09088	9.4e-36	1
ENSSSCP00070025512	MIF4G_like_2	PF09090	5.1e-87	2
ENSSSCP00070025512	MIF4G	PF02854	1.6e-30	3
ENSSSCP00070025795	MIF4G_like	PF09088	1e-35	1
ENSSSCP00070025795	MIF4G_like_2	PF09090	4.9e-87	2
ENSSSCP00070025795	MIF4G	PF02854	1.9e-30	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NCBP1-201	ENSSSCT00070029843	3612	790aa	ENSSSCP00070024887
NCBP1-204	ENSSSCT00070030586	3385	1117aa	ENSSSCP00070025512
NCBP1-205	ENSSSCT00070030921	3295	1087aa	ENSSSCP00070025795
NCBP1-203	ENSSSCT00070031338	2253	750aa	ENSSSCP00070026123
NCBP1-202	ENSSSCT00070031657	2265	754aa	ENSSSCP00070026393
NCBP1-206	ENSSSCT00070031756	249	82aa	ENSSSCP00070026476
NCBP1-207	ENSSSCT00070031860	3059	359aa	ENSSSCP00070026563
NCBP1-208	ENSSSCT00070031929	2803	359aa	ENSSSCP00070026619

Gene Model

Click here to download ENSSSCG00070015117's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070015117's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070015117

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.0089	69.5613	sus_scrofa	ENSSSCP00000059925	99.3647	98.7294
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.0089	69.3823	equus_caballus	ENSECAP00000023765	98.6129	97.7301
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	100	100	sus_scrofa_jinhua	ENSSSCP00060022145	100	100
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.2775	69.8299	sus_scrofa_meishan	ENSSSCP00040030232	99.3671	98.7342
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	100	100	sus_scrofa_berkshire	ENSSSCP00065039820	100	100
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.2775	69.7404	sus_scrofa_bamei	ENSSSCP00050020844	99.3671	98.6076
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.2775	69.8299	sus_scrofa_landrace	ENSSSCP00045035253	99.3671	98.7342
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	69.9194	69.1137	ovis_aries_rambouillet	ENSOARP00020002142	98.8608	97.7215
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	100	100	sus_scrofa_rongchang	ENSSSCP00030022482	100	100
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.2775	69.8299	sus_scrofa_pietrain	ENSSSCP00055039023	99.3671	98.7342
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	100	100	sus_scrofa_hampshire	ENSSSCP00035031363	100	100
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	69.9194	69.8299	sus_scrofa_wuzhishan	ENSSSCP00005017597	99.1117	98.9848
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.2775	69.8299	sus_scrofa_tibetan	ENSSSCP00015018691	99.3671	98.7342
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.0985	69.2927	bos_taurus	ENSBTAP00000053621	99.1139	97.9747
ENSSSCG00070015117	sus_scrofa_usmarc	ENSSSCP00070025512	70.2775	69.7404	sus_scrofa_largewhite	ENSSSCP00025042139	99.3671	98.6076

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression