RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00070013460	Gene ID	100153708	Accession	-
Symbol		Alias	-	Full Name	ataxin 2
Status	Confidence	Length	106084 bases	Strand	Plus strand
Position	14 : 108764002 - 108870085	RNA binding domain	LsmAD , PAM2 , SM-ATX
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070022090	LsmAD	PF06741	2.7e-15	1
ENSSSCP00070022090	PAM2	PF07145	6.3e-06	2
ENSSSCP00070022090	SM-ATX	PF14438	9e-21	3
ENSSSCP00070022074	LsmAD	PF06741	2.9e-15	1
ENSSSCP00070022074	PAM2	PF07145	6.8e-06	2
ENSSSCP00070022074	SM-ATX	PF14438	1e-20	3
ENSSSCP00070022095	LsmAD	PF06741	3.1e-15	1
ENSSSCP00070022095	PAM2	PF07145	6.9e-06	2
ENSSSCP00070022095	SM-ATX	PF14438	1.1e-20	3
ENSSSCP00070022046	LsmAD	PF06741	3.4e-15	1
ENSSSCP00070022046	PAM2	PF07145	7.6e-06	2
ENSSSCP00070022046	SM-ATX	PF14438	1.2e-20	3
ENSSSCP00070022019	LsmAD	PF06741	3.5e-15	1
ENSSSCP00070022019	PAM2	PF07145	7.6e-06	2
ENSSSCP00070022019	SM-ATX	PF14438	1.2e-20	3
ENSSSCP00070022002	LsmAD	PF06741	3.6e-15	1
ENSSSCP00070022002	PAM2	PF07145	7.7e-06	2
ENSSSCP00070022002	SM-ATX	PF14438	1.2e-20	3
ENSSSCP00070021908	LsmAD	PF06741	3.7e-15	1
ENSSSCP00070021908	PAM2	PF07145	7.9e-06	2
ENSSSCP00070021908	SM-ATX	PF14438	1.3e-20	3
ENSSSCP00070021927	LsmAD	PF06741	3.8e-15	1
ENSSSCP00070021927	PAM2	PF07145	8.1e-06	2
ENSSSCP00070021927	SM-ATX	PF14438	1.3e-20	3
ENSSSCP00070021942	LsmAD	PF06741	4.1e-15	1
ENSSSCP00070021942	PAM2	PF07145	8.6e-06	2
ENSSSCP00070021942	SM-ATX	PF14438	1.4e-20	3
ENSSSCP00070021896	LsmAD	PF06741	4.1e-15	1
ENSSSCP00070021896	PAM2	PF07145	8.6e-06	2
ENSSSCP00070021896	SM-ATX	PF14438	1.4e-20	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070026364	4462	1299aa	ENSSSCP00070021896
-	ENSSSCT00070026377	4111	1203aa	ENSSSCP00070021908
-	ENSSSCT00070026397	3684	1227aa	ENSSSCP00070021927
-	ENSSSCT00070026414	3876	1291aa	ENSSSCP00070021942
-	ENSSSCT00070026480	5190	1173aa	ENSSSCP00070022002
-	ENSSSCT00070026505	5136	1155aa	ENSSSCP00070022019
-	ENSSSCT00070026534	4392	1156aa	ENSSSCP00070022046
-	ENSSSCT00070026563	4051	1051aa	ENSSSCP00070022074
-	ENSSSCT00070026580	3581	977aa	ENSSSCP00070022090
-	ENSSSCT00070026585	4167	1062aa	ENSSSCP00070022095

Gene Model

Click here to download ENSSSCG00070013460's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070013460's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070026551	56.0297	40.7236	sus_scrofa_usmarc	ENSSSCP00070021896	46.4973	33.7952

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	99.6921	99.5381	sus_scrofa	ENSSSCP00000031182	97.0037	96.8539
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	86.2971	84.7575	equus_caballus	ENSECAP00000026122	95.6485	93.942
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	90.9931	90.4542	sus_scrofa_jinhua	ENSSSCP00060024678	98.2544	97.6725
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	99.923	99.923	sus_scrofa_meishan	ENSSSCP00040002832	99.923	99.923
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	90.9931	90.4542	sus_scrofa_berkshire	ENSSSCP00065047859	98.2544	97.6725
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	90.9931	90.4542	sus_scrofa_bamei	ENSSSCP00050001657	98.2544	97.6725
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	90.9931	90.4542	sus_scrofa_landrace	ENSSSCP00045037604	98.2544	97.6725
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	95.766	94.1493	ovis_aries_rambouillet	ENSOARP00020022647	97.3396	95.6964
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	90.9931	90.4542	sus_scrofa_rongchang	ENSSSCP00030036854	98.2544	97.6725
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	91.0701	90.5312	sus_scrofa_pietrain	ENSSSCP00055035736	98.3375	97.7556
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	91.0701	90.5312	sus_scrofa_hampshire	ENSSSCP00035041437	98.3375	97.7556
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	78.7529	78.7529	sus_scrofa_wuzhishan	ENSSSCP00005015072	80.5512	80.5512
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	83.6798	83.0639	sus_scrofa_tibetan	ENSSSCP00015025251	92.3534	91.6737
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	97.1517	95.3811	bos_taurus	ENSBTAP00000029618	96.0426	94.2922
ENSSSCG00070013460	sus_scrofa_usmarc	ENSSSCP00070021896	90.9931	90.4542	sus_scrofa_largewhite	ENSSSCP00025011137	98.2544	97.6725

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression