RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070013320	Gene ID	100526050	Accession	-
Symbol	AICDA	Alias	-	Full Name	activation induced cytidine deaminase
Status	Confidence	Length	9366 bases	Strand	Minus strand
Position	1 : 244692078 - 244701443	RNA binding domain	APOBEC_N , APOBEC_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070021551	APOBEC_N	PF08210	8.1e-63	1
ENSSSCP00070021551	APOBEC_C	PF05240	1.7e-27	2
ENSSSCP00070021546	APOBEC_N	PF08210	8.3e-63	1
ENSSSCP00070021546	APOBEC_C	PF05240	1.7e-27	2
ENSSSCP00070021543	APOBEC_N	PF08210	1.2e-62	1
ENSSSCP00070021543	APOBEC_C	PF05240	2.3e-27	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AICDA-201	ENSSSCT00070025956	1851	224aa	ENSSSCP00070021543
AICDA-202	ENSSSCT00070025960	1479	198aa	ENSSSCP00070021546
AICDA-203	ENSSSCT00070025965	594	197aa	ENSSSCP00070021551

Gene Model

Click here to download ENSSSCG00070013320's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070013320's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021446	37.2881	22.8814	sus_scrofa_usmarc	ENSSSCP00070021543	39.2857	24.1071
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070045450	26.2019	16.3462	sus_scrofa_usmarc	ENSSSCP00070021543	48.6607	30.3571
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070003559	39.7321	26.7857	sus_scrofa_usmarc	ENSSSCP00070021543	39.7321	26.7857

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	83.0357	82.1429	sus_scrofa	ENSSSCP00000000708	93.9394	92.9293
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	64.7321	58.4821	equus_caballus	ENSECAP00000089291	61.1814	55.2743
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	83.0357	82.1429	sus_scrofa_jinhua	ENSSSCP00060030797	93.9394	92.9293
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	83.0357	82.1429	sus_scrofa_meishan	ENSSSCP00040037084	93.9394	92.9293
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	83.0357	82.1429	sus_scrofa_berkshire	ENSSSCP00065023294	93.9394	92.9293
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	83.0357	82.1429	sus_scrofa_bamei	ENSSSCP00050029209	93.9394	92.9293
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	83.0357	82.1429	sus_scrofa_landrace	ENSSSCP00045037234	93.9394	92.9293
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	80.8036	76.7857	ovis_aries_rambouillet	ENSOARP00020010861	90.9548	86.4322
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	83.0357	82.1429	sus_scrofa_rongchang	ENSSSCP00030021680	93.9394	92.9293
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	81.6964	80.8036	sus_scrofa_pietrain	ENSSSCP00055025086	92.8934	91.8782
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	81.6964	80.8036	sus_scrofa_hampshire	ENSSSCP00035031904	92.8934	91.8782
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	72.7679	69.1964	sus_scrofa_wuzhishan	ENSSSCP00005045130	70.8696	67.3913
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	81.6964	80.8036	sus_scrofa_tibetan	ENSSSCP00015042005	92.8934	91.8782
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	80.8036	78.125	bos_taurus	ENSBTAP00000025096	90.9548	87.9397
ENSSSCG00070013320	sus_scrofa_usmarc	ENSSSCP00070021543	81.6964	80.8036	sus_scrofa_largewhite	ENSSSCP00025008224	92.8934	91.8782

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression