RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00070012287	Gene ID	100037995	Accession	-
Symbol	RPL27	Alias	-	Full Name	ribosomal protein L27
Status	Confidence	Length	2564 bases	Strand	Minus strand
Position	12 : 19601259 - 19603822	RNA binding domain	Ribosomal_L27e , KOW
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070019849	Ribosomal_L27e	PF01777	1.5e-39	1
ENSSSCP00070019849	KOW	PF00467	9.3e-06	2
ENSSSCP00070019859	Ribosomal_L27e	PF01777	1.5e-39	1
ENSSSCP00070019859	KOW	PF00467	9.3e-06	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPL27-201	ENSSSCT00070023999	1026	136aa	ENSSSCP00070019849
RPL27-202	ENSSSCT00070024009	787	136aa	ENSSSCP00070019859

Gene Model

Click here to download ENSSSCG00070012287's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070012287's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070012287

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	100	100	sus_scrofa	ENSSSCP00000024028	100	100
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	98.5294	98.5294	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	98.5294
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	100	99.2647	sus_scrofa_meishan	ENSSSCP00040013313	100	99.2647
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	100	100	sus_scrofa_bamei	ENSSSCP00050034527	100	100
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	100	100	sus_scrofa_landrace	ENSSSCP00045009127	100	100
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	99.2647	99.2647	ovis_aries_rambouillet	ENSOARP00020027350	100	100
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	98.5294	97.7941	ovis_aries_rambouillet	ENSOARP00020010254	98.5294	97.7941
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	100	99.2647	sus_scrofa_rongchang	ENSSSCP00030047070	100	99.2647
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	100	100	sus_scrofa_wuzhishan	ENSSSCP00005008310	100	100
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	99.2647	98.5294	sus_scrofa_tibetan	ENSSSCP00015043148	99.2647	98.5294
ENSSSCG00070012287	sus_scrofa_usmarc	ENSSSCP00070019849	100	100	bos_taurus	ENSBTAP00000023183	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression