RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070008904	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1375 bases	Strand	Minus strand
Position	NPJO01000334.1 : 89460 - 90834	RNA binding domain	LUC7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070014273	LUC7	PF03194	1.6e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070017251	237	78aa	ENSSSCP00070014273

Gene Model

Click here to download ENSSSCG00070008904's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070008904's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070008904	sus_scrofa_usmarc	ENSSSCP00070015965	80.8219	76.7123	sus_scrofa_usmarc	ENSSSCP00070014273	75.641	71.7949

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070008904	sus_scrofa_usmarc	ENSSSCP00070014273	100	100	sus_scrofa	ENSSSCP00000079434	100	100
ENSSSCG00070008904	sus_scrofa_usmarc	ENSSSCP00070014273	80.7692	75.641	sus_scrofa_landrace	ENSSSCP00045000421	75.9036	71.0843
ENSSSCG00070008904	sus_scrofa_usmarc	ENSSSCP00070014273	80.7692	75.641	sus_scrofa_wuzhishan	ENSSSCP00005042535	77.7778	72.8395

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression