RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070008823	Gene ID		Accession	-
Symbol	SMNDC1	Alias	-	Full Name	Sus scrofa survival motor neuron domain containing 1 (SMNDC1), mRNA.
Status	Confidence	Length	14390 bases	Strand	Plus strand
Position	14 : 20675485 - 20689874	RNA binding domain	SMN
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070014161	SMN	PF06003	4.7e-16	1
ENSSSCP00070014171	SMN	PF06003	6.3e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
SMNDC1-201	ENSSSCT00070017109	5212	199aa	ENSSSCP00070014161
SMNDC1-202	ENSSSCT00070017120	1938	238aa	ENSSSCP00070014171

Gene Model

Click here to download ENSSSCG00070008823's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070008823's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070027957	29.3515	17.0648	sus_scrofa_usmarc	ENSSSCP00070014171	36.1345	21.0084

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa	ENSSSCP00000026180	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	99.5798	equus_caballus	ENSECAP00000046360	100	99.5798
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_jinhua	ENSSSCP00060038491	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_meishan	ENSSSCP00040005264	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_berkshire	ENSSSCP00065009775	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_bamei	ENSSSCP00050015902	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_landrace	ENSSSCP00045028187	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	99.1597	ovis_aries_rambouillet	ENSOARP00020019403	100	99.1597
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_rongchang	ENSSSCP00030036708	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_pietrain	ENSSSCP00055015281	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_hampshire	ENSSSCP00035000118	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_wuzhishan	ENSSSCP00005011533	100	100
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_tibetan	ENSSSCP00015013441	85.6115	85.6115
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	99.1597	bos_taurus	ENSBTAP00000000722	100	99.1597
ENSSSCG00070008823	sus_scrofa_usmarc	ENSSSCP00070014171	100	100	sus_scrofa_largewhite	ENSSSCP00025037192	85.6115	85.6115

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression