RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070005890	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	9453 bases	Strand	Plus strand
Position	NPJO01006482.1 : 6958 - 16410	RNA binding domain	PPR_3 , PPR_long , PPR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070009278	PPR_3	PF13812	3.4e-13	1
ENSSSCP00070009278	PPR_long	PF17177	1e-09	2
ENSSSCP00070009278	PPR	PF01535	2.9e-10	3
ENSSSCP00070009278	PPR	PF01535	2.9e-10	4
ENSSSCP00070009259	PPR_3	PF13812	1.8e-10	1
ENSSSCP00070009259	PPR_3	PF13812	1.8e-10	2
ENSSSCP00070009259	PPR_long	PF17177	2.8e-08	3
ENSSSCP00070009259	PPR	PF01535	1.9e-09	4
ENSSSCP00070009269	PPR_3	PF13812	4.1e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070011223	2486	421aa	ENSSSCP00070009259
-	ENSSSCT00070011235	2345	374aa	ENSSSCP00070009269
-	ENSSSCT00070011245	1559	492aa	ENSSSCP00070009278

Gene Model

Click here to download ENSSSCG00070005890's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070005890's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070024300	66.5702	66.4255	sus_scrofa_usmarc	ENSSSCP00070009278	93.4959	93.2927
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070027423	29.4906	17.4263	sus_scrofa_usmarc	ENSSSCP00070009278	22.3577	13.2114

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	93.4959	93.0894	sus_scrofa	ENSSSCP00000008143	68.1481	67.8519
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	88.6179	84.5528	equus_caballus	ENSECAP00000074150	58.0559	55.3928
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	99.5935	98.7805	sus_scrofa_jinhua	ENSSSCP00060025053	62.9012	62.3877
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	99.5935	98.9837	sus_scrofa_meishan	ENSSSCP00040032768	62.9012	62.516
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	100	100	sus_scrofa_berkshire	ENSSSCP00065004367	63.1579	63.1579
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	99.7967	99.5935	sus_scrofa_bamei	ENSSSCP00050007781	63.0295	62.9012
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	100	100	sus_scrofa_landrace	ENSSSCP00045011890	63.1579	63.1579
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	99.3902	98.7805	sus_scrofa_rongchang	ENSSSCP00030028319	67.5414	67.1271
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	99.3902	99.187	sus_scrofa_pietrain	ENSSSCP00055040185	62.7728	62.6444
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	99.7967	99.7967	sus_scrofa_hampshire	ENSSSCP00035026760	63.0295	63.0295
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	97.3577	96.5447	sus_scrofa_wuzhishan	ENSSSCP00005008824	61.8064	61.2903
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	99.7967	99.3902	sus_scrofa_tibetan	ENSSSCP00015021059	63.0295	62.7728
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	89.0244	84.9594	bos_taurus	ENSBTAP00000073709	54.2079	51.7327
ENSSSCG00070005890	sus_scrofa_usmarc	ENSSSCP00070009278	99.5935	98.9837	sus_scrofa_largewhite	ENSSSCP00025029097	62.9012	62.516

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression