RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070003436	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	11453 bases	Strand	Plus strand
Position	6 : 117861826 - 117873278	RNA binding domain	Fibrillarin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070005299	Fibrillarin	PF01269	1.7e-108	1
ENSSSCP00070005284	Fibrillarin	PF01269	1.7e-108	1
ENSSSCP00070005294	Fibrillarin	PF01269	1.7e-108	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070006492	969	322aa	ENSSSCP00070005284
-	ENSSSCT00070006503	975	324aa	ENSSSCP00070005294
-	ENSSSCT00070006509	960	319aa	ENSSSCP00070005299

Gene Model

Click here to download ENSSSCG00070003436's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070003436's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070023698	79.5796	72.973	sus_scrofa_usmarc	ENSSSCP00070005294	81.7901	75

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa	ENSSSCP00000019383	95.0156	95.0156
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	91.9753	91.0494	equus_caballus	ENSECAP00000020790	92.2601	91.3313
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_jinhua	ENSSSCP00060032418	95.0156	95.0156
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	93.8272	93.8272	sus_scrofa_meishan	ENSSSCP00040009784	94.704	94.704
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_berkshire	ENSSSCP00065034984	95.0156	95.0156
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_bamei	ENSSSCP00050004860	95.0156	95.0156
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_landrace	ENSSSCP00045036077	95.0156	95.0156
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.4444	94.1358	ovis_aries_rambouillet	ENSOARP00020020230	89.7361	89.4428
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_rongchang	ENSSSCP00030044140	94.7205	94.7205
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_pietrain	ENSSSCP00055014031	95.0156	95.0156
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_hampshire	ENSSSCP00035002461	95.0156	95.0156
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	67.9012	67.9012	sus_scrofa_wuzhishan	ENSSSCP00005042803	100	100
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_tibetan	ENSSSCP00015000078	95.0156	95.0156
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	93.8272	93.5185	bos_taurus	ENSBTAP00000003340	94.4099	94.0994
ENSSSCG00070003436	sus_scrofa_usmarc	ENSSSCP00070005294	94.1358	94.1358	sus_scrofa_largewhite	ENSSSCP00025022976	95.0156	95.0156

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression