RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070001841	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	116968 bases	Strand	Plus strand
Position	3 : 95067609 - 95184576	RNA binding domain	PPR_3 , PPR_long , PPR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070002882	PPR_3	PF13812	9.5e-31	1
ENSSSCP00070002882	PPR_3	PF13812	9.5e-31	2
ENSSSCP00070002882	PPR_3	PF13812	9.5e-31	3
ENSSSCP00070002882	PPR_long	PF17177	2.6e-25	4
ENSSSCP00070002882	PPR	PF01535	4.5e-32	5
ENSSSCP00070002882	PPR	PF01535	4.5e-32	6
ENSSSCP00070002882	PPR	PF01535	4.5e-32	7
ENSSSCP00070002882	PPR	PF01535	4.5e-32	8
ENSSSCP00070002882	PPR	PF01535	4.5e-32	9
ENSSSCP00070002882	PPR	PF01535	4.5e-32	10

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070003482	6719	1369aa	ENSSSCP00070002882

Gene Model

Click here to download ENSSSCG00070001841's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070001841's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070001841

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.927	99.927	sus_scrofa	ENSSSCP00000009020	97.4359	97.4359
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	93.4259	88.1665	equus_caballus	ENSECAP00000021242	92.7484	87.5272
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	95.3981	95.179	sus_scrofa_jinhua	ENSSSCP00060012441	97.901	97.6762
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.1965	98.6852	sus_scrofa_meishan	ENSSSCP00040003660	95.4993	95.007
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.2695	98.7582	sus_scrofa_berkshire	ENSSSCP00065025062	95.5696	95.0774
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.927	99.927	sus_scrofa_bamei	ENSSSCP00050007598	98.1349	98.1349
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.927	99.927	sus_scrofa_landrace	ENSSSCP00045037686	98.1349	98.1349
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	94.5215	89.7005	ovis_aries_rambouillet	ENSOARP00020008104	92.8264	88.0918
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.927	99.927	sus_scrofa_rongchang	ENSSSCP00030021003	98.1349	98.1349
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.2695	98.7582	sus_scrofa_hampshire	ENSSSCP00035034029	95.5696	95.0774
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	96.0555	95.7633	sus_scrofa_wuzhishan	ENSSSCP00005015003	94.9458	94.657
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.8539	99.8539	sus_scrofa_tibetan	ENSSSCP00015022947	98.0631	98.0631
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	94.3024	89.2622	bos_taurus	ENSBTAP00000021773	92.8109	87.8505
ENSSSCG00070001841	sus_scrofa_usmarc	ENSSSCP00070002882	99.927	99.927	sus_scrofa_largewhite	ENSSSCP00025016910	98.1349	98.1349

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression