Description

Ensembl ID ENSSSCG00065077375 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 114910 bases Strand Minus strand
Position LUXW01046694.1 : 825190 - 940099 RNA binding domain LsmAD , PAM2 , SM-ATX
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00065047911 LsmAD PF06741 2.6e-15 1
ENSSSCP00065047911 PAM2 PF07145 6.5e-06 2
ENSSSCP00065047911 SM-ATX PF14438 9.7e-21 3
ENSSSCP00065048000 LsmAD PF06741 3e-15 1
ENSSSCP00065048000 PAM2 PF07145 7e-06 2
ENSSSCP00065048000 SM-ATX PF14438 1.1e-20 3
ENSSSCP00065047968 LsmAD PF06741 3.3e-15 1
ENSSSCP00065047968 PAM2 PF07145 7.4e-06 2
ENSSSCP00065047968 SM-ATX PF14438 1.1e-20 3
ENSSSCP00065047929 LsmAD PF06741 3.3e-15 1
ENSSSCP00065047929 PAM2 PF07145 7.6e-06 2
ENSSSCP00065047929 SM-ATX PF14438 1.1e-20 3
ENSSSCP00065047783 LsmAD PF06741 3.4e-15 1
ENSSSCP00065047783 PAM2 PF07145 7.5e-06 2
ENSSSCP00065047783 SM-ATX PF14438 1.2e-20 3
ENSSSCP00065047759 LsmAD PF06741 3.5e-15 1
ENSSSCP00065047759 PAM2 PF07145 7.6e-06 2
ENSSSCP00065047759 SM-ATX PF14438 1.2e-20 3
ENSSSCP00065047859 LsmAD PF06741 3.6e-15 1
ENSSSCP00065047859 PAM2 PF07145 7.9e-06 2
ENSSSCP00065047859 SM-ATX PF14438 1.3e-20 3
ENSSSCP00065047746 LsmAD PF06741 3.6e-15 1
ENSSSCP00065047746 PAM2 PF07145 7.7e-06 2
ENSSSCP00065047746 SM-ATX PF14438 1.2e-20 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00065107146 5476 1177aa ENSSSCP00065047746
- ENSSSCT00065107171 5434 1163aa ENSSSCP00065047759
- ENSSSCT00065107204 5556 1155aa ENSSSCP00065047783
- ENSSSCT00065107339 4147 1203aa ENSSSCP00065047859
- ENSSSCT00065107444 6310 1008aa ENSSSCP00065047911
- ENSSSCT00065107480 4536 1158aa ENSSSCP00065047929
- ENSSSCT00065107563 4485 1141aa ENSSSCP00065047968
- ENSSSCT00065107653 6164 1078aa ENSSSCP00065048000

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006502361450.858236.766sus_scrofa_berkshireENSSSCP0006504785946.799733.8321

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785998.254497.6725sus_scrofaENSSSCP0000003118288.539388.015
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785998.254497.6725sus_scrofa_usmarcENSSSCP0007002189690.993190.4542
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785975.561174.9792sus_scrofa_wuzhishanENSSSCP0000501507271.574871.0236
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP00065047859100100sus_scrofa_jinhuaENSSSCP00060024678100100
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785999.916999.9169sus_scrofa_pietrainENSSSCP0005503573699.916999.9169
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785981.130580.0499sus_scrofa_tibetanENSSSCP0001502525182.922781.8182
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785999.916999.9169sus_scrofa_hampshireENSSSCP0003504143799.916999.9169
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785998.337597.7556sus_scrofa_meishanENSSSCP0004000283291.070190.5312
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785983.790581.9618equus_caballusENSECAP0000002612286.006884.1297
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785994.01592.02ovis_aries_rambouilletENSOARP0002002264788.497786.6197
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP00065047859100100sus_scrofa_largewhiteENSSSCP00025011137100100
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP00065047859100100sus_scrofa_rongchangENSSSCP00030036854100100
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP00065047859100100sus_scrofa_landraceENSSSCP00045037604100100
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP00065047859100100sus_scrofa_bameiENSSSCP00050001657100100
ENSSSCG00065077375sus_scrofa_berkshireENSSSCP0006504785995.511293.35bos_taurusENSBTAP0000002961887.442985.4642

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression