RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065073521	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	64334 bases	Strand	Minus strand
Position	LUXW01090028.1 : 1325042 - 1389375	RNA binding domain	FF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065044594	FF	PF01846	1.3e-73	1
ENSSSCP00065044594	FF	PF01846	1.3e-73	2
ENSSSCP00065044594	FF	PF01846	1.3e-73	3
ENSSSCP00065044594	FF	PF01846	1.3e-73	4
ENSSSCP00065044594	FF	PF01846	1.3e-73	5
ENSSSCP00065044594	FF	PF01846	1.3e-73	6
ENSSSCP00065044618	FF	PF01846	1.5e-73	1
ENSSSCP00065044618	FF	PF01846	1.5e-73	2
ENSSSCP00065044618	FF	PF01846	1.5e-73	3
ENSSSCP00065044618	FF	PF01846	1.5e-73	4
ENSSSCP00065044618	FF	PF01846	1.5e-73	5
ENSSSCP00065044618	FF	PF01846	1.5e-73	6
ENSSSCP00065044643	FF	PF01846	3.2e-63	1
ENSSSCP00065044643	FF	PF01846	3.2e-63	2
ENSSSCP00065044643	FF	PF01846	3.2e-63	3
ENSSSCP00065044643	FF	PF01846	3.2e-63	4
ENSSSCP00065044643	FF	PF01846	3.2e-63	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065101297	4314	1087aa	ENSSSCP00065044594
-	ENSSSCT00065101338	4359	1105aa	ENSSSCP00065044618
-	ENSSSCT00065101383	4303	1039aa	ENSSSCP00065044643
-	ENSSSCT00065101471	5039	557aa	ENSSSCP00065044689

Gene Model

Click here to download ENSSSCG00065073521's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065073521's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065042034	55.4054	35.473	sus_scrofa_berkshire	ENSSSCP00065044618	29.6833	19.0045
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065041849	23.819	10.6454	sus_scrofa_berkshire	ENSSSCP00065044618	32.3982	14.4796

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	92.0362	91.6742	sus_scrofa	ENSSSCP00000033867	95.4034	95.0281
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	99.819	99.819	sus_scrofa_usmarc	ENSSSCP00070008109	96.5004	96.5004
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	97.7376	97.7376	sus_scrofa_wuzhishan	ENSSSCP00005026002	99.4475	99.4475
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	99.5475	99.5475	sus_scrofa_jinhua	ENSSSCP00060015158	99.9092	99.9092
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	98.19	98.19	sus_scrofa_pietrain	ENSSSCP00055046275	99.9079	99.9079
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	99.7285	99.7285	sus_scrofa_tibetan	ENSSSCP00015013661	99.9093	99.9093
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	98.19	98.19	sus_scrofa_hampshire	ENSSSCP00035000180	99.9079	99.9079
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	99.7285	99.7285	sus_scrofa_meishan	ENSSSCP00040008416	99.9093	99.9093
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	95.6561	95.3846	equus_caballus	ENSECAP00000033123	97.2401	96.9641
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	95.1131	95.0226	ovis_aries_rambouillet	ENSOARP00020027557	99.3384	99.2439
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	86.3348	84.9774	ovis_aries_rambouillet	ENSOARP00020010843	95.9759	94.4668
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	98.19	98.19	sus_scrofa_largewhite	ENSSSCP00025027005	99.9079	99.9079
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	99.7285	99.7285	sus_scrofa_rongchang	ENSSSCP00030042615	99.9093	99.9093
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	98.2805	98.2805	sus_scrofa_landrace	ENSSSCP00045041489	100	100
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	99.7285	99.7285	sus_scrofa_bamei	ENSSSCP00050025955	99.9093	99.9093
ENSSSCG00065073521	sus_scrofa_berkshire	ENSSSCP00065044618	96.9231	96.8326	bos_taurus	ENSBTAP00000068923	95.8818	95.7923

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression