RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065069604	Gene ID		Accession	-
Symbol	ARHGAP5	Alias	-	Full Name	NA
Status	Confidence	Length	134457 bases	Strand	Plus strand
Position	LUXW01057467.1 : 292194 - 426650	RNA binding domain	FF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065041833	FF	PF01846	3.1e-12	1
ENSSSCP00065041836	FF	PF01846	3.2e-12	1
ENSSSCP00065041849	FF	PF01846	4e-12	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ARHGAP5-202	ENSSSCT00065095584	4563	1404aa	ENSSSCP00065041833
ARHGAP5-201	ENSSSCT00065095590	5014	1413aa	ENSSSCP00065041836
ARHGAP5-203	ENSSSCT00065095610	7292	1503aa	ENSSSCP00065041849
ARHGAP5-204	ENSSSCT00065095617	3198	237aa	ENSSSCP00065041852

Gene Model

Click here to download ENSSSCG00065069604's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065069604's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065042034	30.9122	16.0473	sus_scrofa_berkshire	ENSSSCP00065041849	12.1756	6.32069
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065044618	32.3982	14.4796	sus_scrofa_berkshire	ENSSSCP00065041849	23.819	10.6454

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	100	sus_scrofa	ENSSSCP00000021934	100	100
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	100	sus_scrofa_usmarc	ENSSSCP00070010231	100	100
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	15.2362	14.837	sus_scrofa_wuzhishan	ENSSSCP00005040153	97.4468	94.8936
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	99.9335	sus_scrofa_jinhua	ENSSSCP00060003359	100	99.9335
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	99.9335	99.9335	sus_scrofa_pietrain	ENSSSCP00055004215	99.9335	99.9335
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	99.9335	sus_scrofa_tibetan	ENSSSCP00015022137	100	99.9335
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	100	sus_scrofa_hampshire	ENSSSCP00035000107	100	100
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	99.9335	sus_scrofa_meishan	ENSSSCP00040033723	100	99.9335
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	99.3347	98.7359	equus_caballus	ENSECAP00000032854	99.3347	98.7359
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	99.3347	98.6693	ovis_aries_rambouillet	ENSOARP00020007008	99.3347	98.6693
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	100	sus_scrofa_largewhite	ENSSSCP00025012259	100	100
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	99.9335	99.9335	sus_scrofa_rongchang	ENSSSCP00030009970	99.9335	99.9335
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	100	sus_scrofa_landrace	ENSSSCP00045008365	100	100
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	100	100	sus_scrofa_bamei	ENSSSCP00050004294	100	100
ENSSSCG00065069604	sus_scrofa_berkshire	ENSSSCP00065041849	99.2681	98.6693	bos_taurus	ENSBTAP00000038500	99.2681	98.6693

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression