RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00065069556	Gene ID		Accession	-
Symbol	NOP56	Alias	-	Full Name	NA
Status	Confidence	Length	8172 bases	Strand	Minus strand
Position	LUXW01091988.1 : 1663593 - 1671764	RNA binding domain	Nop , NOP5NT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065041825	Nop	PF01798	3.2e-82	1
ENSSSCP00065041825	NOP5NT	PF08156	5.7e-18	2
ENSSSCP00065041821	Nop	PF01798	3.5e-82	1
ENSSSCP00065041821	NOP5NT	PF08156	4.9e-18	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NOP56-201	ENSSSCT00065095551	4868	596aa	ENSSSCP00065041821
NOP56-202	ENSSSCT00065095565	1716	571aa	ENSSSCP00065041825

Gene Model

Click here to download ENSSSCG00065069556's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065069556's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065008923	60.3291	40.7678	sus_scrofa_berkshire	ENSSSCP00065041821	55.3691	37.4161

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	100	100	sus_scrofa	ENSSSCP00000007637	100	100
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	100	100	sus_scrofa_usmarc	ENSSSCP00070001848	100	100
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	100	100	sus_scrofa_wuzhishan	ENSSSCP00005023813	100	100
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	99.8322	99.8322	sus_scrofa_jinhua	ENSSSCP00060001736	98.8372	98.8372
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	99.8322	99.8322	sus_scrofa_pietrain	ENSSSCP00055001770	98.8372	98.8372
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	99.8322	99.8322	sus_scrofa_tibetan	ENSSSCP00015029633	98.8372	98.8372
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	100	100	sus_scrofa_hampshire	ENSSSCP00035026029	100	100
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	100	100	sus_scrofa_meishan	ENSSSCP00040031602	100	100
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	97.1477	95.1342	equus_caballus	ENSECAP00000018952	93.9935	92.0455
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	97.3154	94.9664	ovis_aries_rambouillet	ENSOARP00020010266	97.3154	94.9664
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	90.7718	88.4228	ovis_aries_rambouillet	ENSOARP00020009066	92.4786	90.0855
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	99.8322	99.8322	sus_scrofa_largewhite	ENSSSCP00025020681	98.8372	98.8372
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	99.8322	99.8322	sus_scrofa_rongchang	ENSSSCP00030020290	98.8372	98.8372
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	99.8322	99.8322	sus_scrofa_landrace	ENSSSCP00045000494	98.8372	98.8372
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	99.8322	99.6644	sus_scrofa_bamei	ENSSSCP00050025929	98.8372	98.6711
ENSSSCG00065069556	sus_scrofa_berkshire	ENSSSCP00065041821	97.651	95.4698	bos_taurus	ENSBTAP00000025042	97.651	95.4698

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression