RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00065066720	Gene ID		Accession	-
Symbol	FXR1	Alias	-	Full Name	NA
Status	Confidence	Length	60515 bases	Strand	Plus strand
Position	LUXW01060640.1 : 496306 - 556820	RNA binding domain	Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065040109	Agenet	PF05641	9.3e-15	1
ENSSSCP00065040109	Agenet	PF05641	9.3e-15	2
ENSSSCP00065040109	FXR_C1	PF16096	5e-39	3
ENSSSCP00065040109	KH_1	PF00013	6.5e-17	4
ENSSSCP00065040109	KH_1	PF00013	6.5e-17	5
ENSSSCP00065040109	KH_9	PF17904	1.3e-36	6
ENSSSCP00065040109	FXMRP1_C_core	PF12235	6.5e-34	7
ENSSSCP00065040109	FXMRP1_C_core	PF12235	6.5e-34	8
ENSSSCP00065040126	Agenet	PF05641	1.2e-14	1
ENSSSCP00065040126	Agenet	PF05641	1.2e-14	2
ENSSSCP00065040126	FXR_C1	PF16096	5e-39	3
ENSSSCP00065040126	KH_1	PF00013	7.1e-17	4
ENSSSCP00065040126	KH_1	PF00013	7.1e-17	5
ENSSSCP00065040126	KH_9	PF17904	4e-16	6
ENSSSCP00065040126	FXMRP1_C_core	PF12235	9.7e-33	7
ENSSSCP00065040126	FXMRP1_C_core	PF12235	9.7e-33	8
ENSSSCP00065040121	Agenet	PF05641	1.3e-14	1
ENSSSCP00065040121	Agenet	PF05641	1.3e-14	2
ENSSSCP00065040121	FXR_C1	PF16096	1.2e-38	3
ENSSSCP00065040121	KH_1	PF00013	8.9e-17	4
ENSSSCP00065040121	KH_1	PF00013	8.9e-17	5
ENSSSCP00065040121	KH_9	PF17904	1.6e-36	6
ENSSSCP00065040121	FXMRP1_C_core	PF12235	2.2e-54	7
ENSSSCP00065040108	Agenet	PF05641	1.6e-14	1
ENSSSCP00065040108	FXR_C1	PF16096	1.4e-38	2
ENSSSCP00065040108	KH_1	PF00013	9.5e-17	3
ENSSSCP00065040108	KH_1	PF00013	9.5e-17	4
ENSSSCP00065040108	KH_9	PF17904	1.5e-36	5
ENSSSCP00065040108	FXMRP1_C_core	PF12235	1.6e-33	6
ENSSSCP00065040108	FXMRP1_C_core	PF12235	1.6e-33	7
ENSSSCP00065040113	Agenet	PF05641	1.8e-14	1
ENSSSCP00065040113	FXR_C1	PF16096	1.4e-38	2
ENSSSCP00065040113	KH_1	PF00013	1.1e-16	3
ENSSSCP00065040113	KH_1	PF00013	1.1e-16	4
ENSSSCP00065040113	KH_9	PF17904	1.7e-36	5
ENSSSCP00065040113	FXMRP1_C_core	PF12235	2.3e-54	6
ENSSSCP00065040167	Agenet	PF05641	2.3e-08	1
ENSSSCP00065040167	FXR_C1	PF16096	4.7e-39	2
ENSSSCP00065040167	KH_1	PF00013	6e-17	3
ENSSSCP00065040167	KH_1	PF00013	6e-17	4
ENSSSCP00065040167	KH_9	PF17904	1.2e-36	5
ENSSSCP00065040167	FXMRP1_C_core	PF12235	1e-32	6
ENSSSCP00065040167	FXMRP1_C_core	PF12235	1e-32	7
ENSSSCP00065040143	Agenet	PF05641	3.2e-08	1
ENSSSCP00065040143	FXR_C1	PF16096	1.4e-38	2
ENSSSCP00065040143	KH_1	PF00013	1e-16	3
ENSSSCP00065040143	KH_1	PF00013	1e-16	4
ENSSSCP00065040143	KH_9	PF17904	1.6e-36	5
ENSSSCP00065040143	FXMRP1_C_core	PF12235	2.4e-54	6
ENSSSCP00065040134	Agenet	PF05641	7.4e-06	1
ENSSSCP00065040134	FXR_C1	PF16096	4.3e-39	2
ENSSSCP00065040134	KH_1	PF00013	5.2e-17	3
ENSSSCP00065040134	KH_1	PF00013	5.2e-17	4
ENSSSCP00065040134	KH_9	PF17904	1.1e-36	5
ENSSSCP00065040134	FXMRP1_C_core	PF12235	5e-34	6
ENSSSCP00065040134	FXMRP1_C_core	PF12235	5e-34	7
ENSSSCP00065040170	FXR_C1	PF16096	4.4e-39	1
ENSSSCP00065040170	KH_1	PF00013	5.9e-17	2
ENSSSCP00065040170	KH_1	PF00013	5.9e-17	3
ENSSSCP00065040170	KH_9	PF17904	1e-36	4
ENSSSCP00065040170	FXMRP1_C_core	PF12235	7.2e-33	5
ENSSSCP00065040170	FXMRP1_C_core	PF12235	7.2e-33	6

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FXR1-201	ENSSSCT00065091598	2922	648aa	ENSSSCP00065040108
FXR1-202	ENSSSCT00065091610	3035	539aa	ENSSSCP00065040109
FXR1-203	ENSSSCT00065091619	3282	677aa	ENSSSCP00065040113
FXR1-204	ENSSSCT00065091643	6600	604aa	ENSSSCP00065040121
FXR1-205	ENSSSCT00065091654	1756	582aa	ENSSSCP00065040126
FXR1-206	ENSSSCT00065091689	1473	490aa	ENSSSCP00065040134
FXR1-208	ENSSSCT00065091703	1971	656aa	ENSSSCP00065040143
FXR1-207	ENSSSCT00065091758	1551	516aa	ENSSSCP00065040167
FXR1-209	ENSSSCT00065091762	4775	536aa	ENSSSCP00065040170

Gene Model

Click here to download ENSSSCG00065066720's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065066720's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065030149	70.7692	60.6993	sus_scrofa_berkshire	ENSSSCP00065040113	74.7415	64.1064
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065007400	67.0886	57.2785	sus_scrofa_berkshire	ENSSSCP00065040113	62.6292	53.4712

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa	ENSSSCP00000023407	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_usmarc	ENSSSCP00070035232	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_wuzhishan	ENSSSCP00005006524	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_jinhua	ENSSSCP00060012232	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_pietrain	ENSSSCP00055003371	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_tibetan	ENSSSCP00015039423	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_hampshire	ENSSSCP00035026896	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_meishan	ENSSSCP00040017268	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	99.5569	99.4092	equus_caballus	ENSECAP00000023539	96.5616	96.4183
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	90.2511	88.9217	ovis_aries_rambouillet	ENSOARP00020007735	94	92.6154
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_largewhite	ENSSSCP00025034378	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_rongchang	ENSSSCP00030002313	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_landrace	ENSSSCP00045016997	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	100	100	sus_scrofa_bamei	ENSSSCP00050013264	100	100
ENSSSCG00065066720	sus_scrofa_berkshire	ENSSSCP00065040113	95.421	95.2733	bos_taurus	ENSBTAP00000068817	99.6914	99.537

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression