RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065065769	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	80495 bases	Strand	Minus strand
Position	LUXW01052523.1 : 1959480 - 2039974	RNA binding domain	Endonuclease_5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065039490	Endonuclease_5	PF04493	1.7e-65	1
ENSSSCP00065039467	Endonuclease_5	PF04493	2e-65	1
ENSSSCP00065039478	Endonuclease_5	PF04493	2.8e-61	1
ENSSSCP00065039478	Endonuclease_5	PF04493	2.8e-61	2
ENSSSCP00065039495	Endonuclease_5	PF04493	8.5e-44	1
ENSSSCP00065039495	Endonuclease_5	PF04493	8.5e-44	2
ENSSSCP00065039472	Endonuclease_5	PF04493	1.1e-43	1
ENSSSCP00065039472	Endonuclease_5	PF04493	1.1e-43	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065090267	6207	307aa	ENSSSCP00065039467
-	ENSSSCT00065090277	4604	262aa	ENSSSCP00065039472
-	ENSSSCT00065090290	6686	312aa	ENSSSCP00065039478
-	ENSSSCT00065090306	6626	292aa	ENSSSCP00065039490
-	ENSSSCT00065090314	6491	247aa	ENSSSCP00065039495

Gene Model

Click here to download ENSSSCG00065065769's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065065769's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065065769

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	88.7821	88.7821	sus_scrofa	ENSSSCP00000080153	100	100
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	86.859	86.2179	sus_scrofa_usmarc	ENSSSCP00070027623	84.1615	83.5404
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	83.0128	83.0128	sus_scrofa_wuzhishan	ENSSSCP00005036072	100	100
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	89.1026	89.1026	sus_scrofa_jinhua	ENSSSCP00060040984	100	100
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	64.1026	61.2179	sus_scrofa_pietrain	ENSSSCP00055033650	74.6269	71.2687
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	64.1026	61.2179	sus_scrofa_tibetan	ENSSSCP00015025917	74.6269	71.2687
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	89.1026	89.1026	sus_scrofa_hampshire	ENSSSCP00035047866	100	100
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	87.5	86.5385	sus_scrofa_meishan	ENSSSCP00040024065	79.8246	78.9474
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	83.6538	78.8462	equus_caballus	ENSECAP00000039277	74.359	70.0855
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	82.3718	75.9615	ovis_aries_rambouillet	ENSOARP00020028252	92.1147	84.9462
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	89.1026	89.1026	sus_scrofa_largewhite	ENSSSCP00025029394	100	100
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	89.1026	89.1026	sus_scrofa_rongchang	ENSSSCP00030004041	100	100
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	89.1026	89.1026	sus_scrofa_landrace	ENSSSCP00045024158	100	100
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	100	99.359	sus_scrofa_bamei	ENSSSCP00050015854	100	99.359
ENSSSCG00065065769	sus_scrofa_berkshire	ENSSSCP00065039478	76.6026	69.8718	bos_taurus	ENSBTAP00000062292	59.8997	54.6366

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression