RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065063500	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	13185 bases	Strand	Plus strand
Position	LUXW01091988.1 : 1225165 - 1238349	RNA binding domain	RAP , FAST_2 , FAST_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065038114	RAP	PF08373	1.9e-11	1
ENSSSCP00065038114	FAST_2	PF08368	2e-23	2
ENSSSCP00065038114	FAST_1	PF06743	3.5e-19	3
ENSSSCP00065038116	RAP	PF08373	1.9e-11	1
ENSSSCP00065038116	FAST_2	PF08368	2e-23	2
ENSSSCP00065038116	FAST_1	PF06743	3.5e-19	3
ENSSSCP00065038117	RAP	PF08373	1.9e-11	1
ENSSSCP00065038117	FAST_2	PF08368	2e-23	2
ENSSSCP00065038117	FAST_1	PF06743	3.5e-19	3
ENSSSCP00065038118	RAP	PF08373	1.9e-11	1
ENSSSCP00065038118	FAST_2	PF08368	2e-23	2
ENSSSCP00065038118	FAST_1	PF06743	3.5e-19	3
ENSSSCP00065038119	RAP	PF08373	1.9e-11	1
ENSSSCP00065038119	FAST_2	PF08368	2e-23	2
ENSSSCP00065038119	FAST_1	PF06743	3.5e-19	3
ENSSSCP00065038121	RAP	PF08373	1.9e-11	1
ENSSSCP00065038121	FAST_2	PF08368	2e-23	2
ENSSSCP00065038121	FAST_1	PF06743	3.5e-19	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065087125	2947	813aa	ENSSSCP00065038114
-	ENSSSCT00065087129	3159	813aa	ENSSSCP00065038116
-	ENSSSCT00065087130	3093	813aa	ENSSSCP00065038117
-	ENSSSCT00065087133	2828	813aa	ENSSSCP00065038118
-	ENSSSCT00065087135	3010	813aa	ENSSSCP00065038119
-	ENSSSCT00065087137	6677	813aa	ENSSSCP00065038121

Gene Model

Click here to download ENSSSCG00065063500's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065063500's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065004146	33.8517	15.6699	sus_scrofa_berkshire	ENSSSCP00065038121	34.8093	16.1132
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065026982	34.3168	18.4783	sus_scrofa_berkshire	ENSSSCP00065038121	27.1833	14.6371
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065031978	33.672	16.1103	sus_scrofa_berkshire	ENSSSCP00065038121	28.5363	13.6531
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065009692	35.2848	17.7215	sus_scrofa_berkshire	ENSSSCP00065038121	27.4293	13.7761
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065022238	28.8235	16.1765	sus_scrofa_berkshire	ENSSSCP00065038121	24.1082	13.5301

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	100	100	sus_scrofa	ENSSSCP00000071796	100	100
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	99.877	99.631	sus_scrofa_wuzhishan	ENSSSCP00005042957	99.877	99.631
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	100	100	sus_scrofa_jinhua	ENSSSCP00060006102	100	100
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	100	99.877	sus_scrofa_pietrain	ENSSSCP00055020376	100	99.877
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	99.631	99.631	sus_scrofa_tibetan	ENSSSCP00015033506	99.631	99.631
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	99.877	99.754	sus_scrofa_hampshire	ENSSSCP00035022546	99.877	99.754
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	99.877	99.877	sus_scrofa_meishan	ENSSSCP00040015910	99.877	99.877
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	92.1279	85.4859	equus_caballus	ENSECAP00000063041	91.7892	85.1716
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	92.4969	86.9619	ovis_aries_rambouillet	ENSOARP00020007628	92.3833	86.855
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	99.631	99.631	sus_scrofa_largewhite	ENSSSCP00025026066	99.631	99.631
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	99.754	99.631	sus_scrofa_rongchang	ENSSSCP00030022353	99.754	99.631
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	99.631	99.631	sus_scrofa_landrace	ENSSSCP00045002502	99.631	99.631
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	99.754	99.754	sus_scrofa_bamei	ENSSSCP00050034615	99.754	99.754
ENSSSCG00065063500	sus_scrofa_berkshire	ENSSSCP00065038121	92.4969	87.2079	bos_taurus	ENSBTAP00000071168	92.4969	87.2079

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression