RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065061843	Gene ID		Accession	-
Symbol	RNGTT	Alias	-	Full Name	NA
Status	Confidence	Length	210565 bases	Strand	Minus strand
Position	LUXW01089738.1 : 1114604 - 1325168	RNA binding domain	mRNA_cap_enzyme , mRNA_cap_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065037034	mRNA_cap_enzyme	PF01331	3.9e-77	1
ENSSSCP00065037034	mRNA_cap_C	PF03919	9.5e-20	2
ENSSSCP00065037054	mRNA_cap_enzyme	PF01331	8.3e-71	1
ENSSSCP00065037054	mRNA_cap_enzyme	PF01331	8.3e-71	2
ENSSSCP00065037054	mRNA_cap_C	PF03919	9.4e-20	3
ENSSSCP00065037047	mRNA_cap_enzyme	PF01331	3.4e-61	1
ENSSSCP00065037047	mRNA_cap_C	PF03919	8.4e-20	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RNGTT-201	ENSSSCT00065084818	3857	621aa	ENSSSCP00065037034
RNGTT-202	ENSSSCT00065084845	3716	574aa	ENSSSCP00065037047
RNGTT-203	ENSSSCT00065084857	4500	623aa	ENSSSCP00065037054

Gene Model

Click here to download ENSSSCG00065061843's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065061843's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065008852	39.8089	24.8408	sus_scrofa_berkshire	ENSSSCP00065037054	20.0642	12.5201

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	100	100	sus_scrofa	ENSSSCP00000044017	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	90.8507	89.2456	sus_scrofa_usmarc	ENSSSCP00070041644	87.8882	86.3354
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	90.6902	90.6902	sus_scrofa_wuzhishan	ENSSSCP00005024768	97.9203	97.9203
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	95.8266	95.8266	sus_scrofa_jinhua	ENSSSCP00060029304	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	100	100	sus_scrofa_pietrain	ENSSSCP00055005033	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	95.8266	95.8266	sus_scrofa_tibetan	ENSSSCP00015018677	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	99.8395	99.8395	sus_scrofa_hampshire	ENSSSCP00035041645	99.8395	99.8395
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	100	100	sus_scrofa_meishan	ENSSSCP00040046207	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	94.8636	94.382	equus_caballus	ENSECAP00000044531	96.4111	95.9217
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	94.703	93.74	ovis_aries_rambouillet	ENSOARP00020016788	99.1597	98.1513
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	92.1348	92.1348	sus_scrofa_largewhite	ENSSSCP00025039203	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	100	100	sus_scrofa_rongchang	ENSSSCP00030036926	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	100	100	sus_scrofa_landrace	ENSSSCP00045034768	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	95.8266	95.8266	sus_scrofa_bamei	ENSSSCP00050018959	100	100
ENSSSCG00065061843	sus_scrofa_berkshire	ENSSSCP00065037054	94.703	93.9005	bos_taurus	ENSBTAP00000003532	99.1597	98.3193

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression