RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00065057124	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2937 bases	Strand	Plus strand
Position	LUXW01028625.1 : 1033482 - 1036418	RNA binding domain	Ribosomal_S13_N , Ribosomal_S15
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065034013	Ribosomal_S13_N	PF08069	1.8e-30	1
ENSSSCP00065034013	Ribosomal_S15	PF00312	2.2e-11	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065078205	687	212aa	ENSSSCP00065034013

Gene Model

Click here to download ENSSSCG00065057124's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065057124's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065031283	87.3016	79.3651	sus_scrofa_berkshire	ENSSSCP00065034013	25.9434	23.5849

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	98.1132	98.1132	sus_scrofa	ENSSSCP00000014220	97.6526	97.6526
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	98.1132	98.1132	sus_scrofa_usmarc	ENSSSCP00070013649	97.6526	97.6526
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	98.1132	98.1132	sus_scrofa_wuzhishan	ENSSSCP00005000563	97.6526	97.6526
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	100	100	sus_scrofa_jinhua	ENSSSCP00060009623	100	100
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	100	100	sus_scrofa_pietrain	ENSSSCP00055008736	100	100
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	97.6415	97.6415	sus_scrofa_tibetan	ENSSSCP00015002018	97.1831	97.1831
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	100	100	sus_scrofa_hampshire	ENSSSCP00035042342	100	100
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	100	100	sus_scrofa_meishan	ENSSSCP00040026015	100	100
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	74.0566	70.7547	equus_caballus	ENSECAP00000075440	72.3502	69.1244
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	27.3585	23.1132	ovis_aries_rambouillet	ENSOARP00020014150	65.1685	55.0562
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	23.1132	21.6981	ovis_aries_rambouillet	ENSOARP00020010379	80.3279	75.4098
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	25.9434	23.5849	ovis_aries_rambouillet	ENSOARP00020003841	74.3243	67.5676
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	25	25	ovis_aries_rambouillet	ENSOARP00020010172	96.3636	96.3636
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	100	100	sus_scrofa_largewhite	ENSSSCP00025010320	100	100
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	100	100	sus_scrofa_rongchang	ENSSSCP00030022490	100	100
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	98.1132	98.1132	sus_scrofa_landrace	ENSSSCP00045034623	97.6526	97.6526
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	98.1132	98.1132	sus_scrofa_bamei	ENSSSCP00050040932	97.6526	97.6526
ENSSSCG00065057124	sus_scrofa_berkshire	ENSSSCP00065034013	22.1698	20.283	bos_taurus	ENSBTAP00000070665	72.3077	66.1538

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression