RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065053136	Gene ID		Accession	-
Symbol	DHX16	Alias	-	Full Name	NA
Status	Confidence	Length	18083 bases	Strand	Plus strand
Position	LUXW01072954.1 : 123478 - 141560	RNA binding domain	DEAD , HA2 , OB_NTP_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065031832	DEAD	PF00270	8.5e-06	1
ENSSSCP00065031832	HA2	PF04408	5.8e-19	2
ENSSSCP00065031832	OB_NTP_bind	PF07717	9.7e-20	3
ENSSSCP00065031844	DEAD	PF00270	8.8e-06	1
ENSSSCP00065031844	HA2	PF04408	5.9e-19	2
ENSSSCP00065031844	OB_NTP_bind	PF07717	9.9e-20	3
ENSSSCP00065031840	DEAD	PF00270	9.2e-06	1
ENSSSCP00065031840	HA2	PF04408	5.3e-19	2
ENSSSCP00065031855	HA2	PF04408	1e-19	1
ENSSSCP00065031855	OB_NTP_bind	PF07717	4e-20	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DHX16-201	ENSSSCT00065073071	3995	1045aa	ENSSSCP00065031832
DHX16-202	ENSSSCT00065073084	3235	987aa	ENSSSCP00065031840
DHX16-203	ENSSSCT00065073096	3453	1062aa	ENSSSCP00065031844
DHX16-204	ENSSSCT00065073120	1677	558aa	ENSSSCP00065031855

Gene Model

Click here to download ENSSSCG00065053136's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065053136's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065045272	49.7976	28.3401	sus_scrofa_berkshire	ENSSSCP00065031844	34.7458	19.774
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065006585	24.9027	11.6732	sus_scrofa_berkshire	ENSSSCP00065031844	24.1055	11.2994
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065035950	24.622	13.8949	sus_scrofa_berkshire	ENSSSCP00065031844	32.2034	18.1733
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065033254	39.0316	23.5178	sus_scrofa_berkshire	ENSSSCP00065031844	37.194	22.4105
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065035308	53.7869	35.6868	sus_scrofa_berkshire	ENSSSCP00065031844	39.4539	26.177
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065002254	30.6907	17.2684	sus_scrofa_berkshire	ENSSSCP00065031844	36.8173	20.7156
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065009339	64.5804	45.377	sus_scrofa_berkshire	ENSSSCP00065031844	42.7495	30.0377
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065000152	34.2546	21.5243	sus_scrofa_berkshire	ENSSSCP00065031844	38.5122	24.1996
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065034782	38.1693	25.0432	sus_scrofa_berkshire	ENSSSCP00065031844	41.6196	27.307
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065018010	47.5143	32.1108	sus_scrofa_berkshire	ENSSSCP00065031844	54.8964	37.0998
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065023025	61.0063	44.7799	sus_scrofa_berkshire	ENSSSCP00065031844	45.6685	33.5217
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065032842	48.7465	29.9443	sus_scrofa_berkshire	ENSSSCP00065031844	32.9567	20.2448
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065009108	28.6957	16.646	sus_scrofa_berkshire	ENSSSCP00065031844	21.7514	12.6177
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065041977	51.9802	36.9637	sus_scrofa_berkshire	ENSSSCP00065031844	59.322	42.1846
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065009614	60.8359	43.0341	sus_scrofa_berkshire	ENSSSCP00065031844	37.0056	26.177
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065016609	31.918	18.5212	sus_scrofa_berkshire	ENSSSCP00065031844	41.0546	23.823
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065006176	27.4205	16.408	sus_scrofa_berkshire	ENSSSCP00065031844	34.9341	20.904
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065004959	32.897	20.9424	sus_scrofa_berkshire	ENSSSCP00065031844	35.4991	22.5989

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	100	99.9058	sus_scrofa	ENSSSCP00000001456	100	99.9058
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	98.3992	98.3992	sus_scrofa_usmarc	ENSSSCP00070041534	100	100
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	98.3051	98.3051	sus_scrofa_wuzhishan	ENSSSCP00005006942	99.9043	99.9043
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	98.3051	98.3051	sus_scrofa_jinhua	ENSSSCP00060028784	99.9043	99.9043
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	98.3051	98.3051	sus_scrofa_pietrain	ENSSSCP00055048753	99.9043	99.9043
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	98.3051	98.3051	sus_scrofa_tibetan	ENSSSCP00015013612	99.9043	99.9043
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	100	100	sus_scrofa_hampshire	ENSSSCP00035034588	100	100
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	98.3992	98.3992	sus_scrofa_meishan	ENSSSCP00040042005	100	100
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	89.548	88.2298	equus_caballus	ENSECAP00000084713	95.7704	94.3605
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	97.4576	96.3277	ovis_aries_rambouillet	ENSOARP00020026885	99.0431	97.8947
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	100	100	sus_scrofa_largewhite	ENSSSCP00025049027	100	100
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	98.3051	98.3051	sus_scrofa_rongchang	ENSSSCP00030039213	99.9043	99.9043
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	100	99.9058	sus_scrofa_landrace	ENSSSCP00045048637	100	99.9058
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	100	100	sus_scrofa_bamei	ENSSSCP00050010616	100	100
ENSSSCG00065053136	sus_scrofa_berkshire	ENSSSCP00065031844	97.2693	96.1394	bos_taurus	ENSBTAP00000009148	98.8517	97.7033

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression