RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065050534	Gene ID		Accession	-
Symbol	R3HDM1	Alias	-	Full Name	NA
Status	Confidence	Length	183434 bases	Strand	Plus strand
Position	LUXW01078539.1 : 1178306 - 1361739	RNA binding domain	R3H , SUZ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065030164	R3H	PF01424	4.1e-11	1
ENSSSCP00065030164	SUZ	PF12752	3.2e-11	2
ENSSSCP00065030159	R3H	PF01424	4.4e-11	1
ENSSSCP00065030159	SUZ	PF12752	3.4e-11	2
ENSSSCP00065030161	R3H	PF01424	4.5e-11	1
ENSSSCP00065030161	SUZ	PF12752	3.4e-11	2
ENSSSCP00065030163	R3H	PF01424	4.7e-11	1
ENSSSCP00065030163	SUZ	PF12752	3.5e-11	2
ENSSSCP00065030154	R3H	PF01424	4.7e-11	1
ENSSSCP00065030154	SUZ	PF12752	3.6e-11	2
ENSSSCP00065030168	R3H	PF01424	4.8e-11	1
ENSSSCP00065030168	SUZ	PF12752	3.7e-11	2
ENSSSCP00065030169	R3H	PF01424	4.6e-10	1
ENSSSCP00065030169	SUZ	PF12752	3.7e-11	2
ENSSSCP00065030166	R3H	PF01424	1.6e-08	1
ENSSSCP00065030166	SUZ	PF12752	3.5e-11	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
R3HDM1-201	ENSSSCT00065069225	4707	1100aa	ENSSSCP00065030154
R3HDM1-202	ENSSSCT00065069230	4619	1056aa	ENSSSCP00065030159
R3HDM1-203	ENSSSCT00065069234	4352	1044aa	ENSSSCP00065030161
R3HDM1-204	ENSSSCT00065069238	4646	1086aa	ENSSSCP00065030163
R3HDM1-205	ENSSSCT00065069241	4473	994aa	ENSSSCP00065030164
R3HDM1-206	ENSSSCT00065069248	4622	1080aa	ENSSSCP00065030166
R3HDM1-207	ENSSSCT00065069255	4864	1134aa	ENSSSCP00065030168
R3HDM1-208	ENSSSCT00065069258	4639	1123aa	ENSSSCP00065030169

Gene Model

Click here to download ENSSSCG00065050534's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065050534's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065024542	68.0523	51.1876	sus_scrofa_berkshire	ENSSSCP00065030168	50.5291	38.0071
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065015281	62.5579	48.5635	sus_scrofa_berkshire	ENSSSCP00065030168	59.5238	46.2081

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	95.679	95.679	sus_scrofa	ENSSSCP00000041129	100	100
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	100	100	sus_scrofa_usmarc	ENSSSCP00070007187	100	100
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	92.4162	92.4162	sus_scrofa_wuzhishan	ENSSSCP00005035432	99.7146	99.7146
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	100	100	sus_scrofa_jinhua	ENSSSCP00060024505	99.8239	99.8239
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	100	100	sus_scrofa_pietrain	ENSSSCP00055003555	100	100
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	30.4233	30.3351	sus_scrofa_tibetan	ENSSSCP00015017227	98.8539	98.5673
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	100	100	sus_scrofa_hampshire	ENSSSCP00035016700	100	100
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	99.9118	99.9118	sus_scrofa_meishan	ENSSSCP00040029899	99.9118	99.9118
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	96.4727	94.9735	equus_caballus	ENSECAP00000017308	98.2047	96.6786
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	89.5944	87.2134	ovis_aries_rambouillet	ENSOARP00020017584	81.28	79.12
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	100	100	sus_scrofa_largewhite	ENSSSCP00025027634	100	100
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	100	100	sus_scrofa_rongchang	ENSSSCP00030002523	99.6485	99.6485
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	100	100	sus_scrofa_landrace	ENSSSCP00045035718	100	100
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	100	100	sus_scrofa_bamei	ENSSSCP00050041411	100	100
ENSSSCG00065050534	sus_scrofa_berkshire	ENSSSCP00065030168	97.8836	96.7372	bos_taurus	ENSBTAP00000058941	98.0565	96.9081

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression