RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065049123	Gene ID		Accession	-
Symbol	RCL1	Alias	-	Full Name	NA
Status	Confidence	Length	62072 bases	Strand	Minus strand
Position	LUXW01060518.1 : 165416 - 227487	RNA binding domain	RTC_insert , RTC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065029217	RTC_insert	PF05189	7e-37	1
ENSSSCP00065029217	RTC	PF01137	4.1e-12	2
ENSSSCP00065029214	RTC_insert	PF05189	2.7e-36	1
ENSSSCP00065029214	RTC	PF01137	4.4e-62	2
ENSSSCP00065029220	RTC_insert	PF05189	2.9e-29	1
ENSSSCP00065029220	RTC	PF01137	2.2e-07	2
ENSSSCP00065029221	RTC	PF01137	9e-36	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RCL1-201	ENSSSCT00065067241	2015	450aa	ENSSSCP00065029214
RCL1-202	ENSSSCT00065067245	4791	215aa	ENSSSCP00065029217
RCL1-203	ENSSSCT00065067252	1332	187aa	ENSSSCP00065029220
RCL1-204	ENSSSCT00065067253	766	173aa	ENSSSCP00065029221

Gene Model

Click here to download ENSSSCG00065049123's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065049123's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065011031	46.7213	27.3224	sus_scrofa_berkshire	ENSSSCP00065029214	38	22.2222

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	40.4444	40.2222	sus_scrofa	ENSSSCP00000071269	97.3262	96.7914
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	100	100	sus_scrofa_usmarc	ENSSSCP00070050226	100	100
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	82.6667	82.6667	sus_scrofa_wuzhishan	ENSSSCP00005029753	99.7319	99.7319
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	99.7778	99.7778	sus_scrofa_jinhua	ENSSSCP00060033946	99.7778	99.7778
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	100	100	sus_scrofa_pietrain	ENSSSCP00055024095	100	100
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	99.7778	99.7778	sus_scrofa_tibetan	ENSSSCP00015035410	99.7778	99.7778
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	100	100	sus_scrofa_hampshire	ENSSSCP00035034062	100	100
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	99.7778	99.7778	sus_scrofa_meishan	ENSSSCP00040006936	99.7778	99.7778
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	81.7778	81.1111	equus_caballus	ENSECAP00000013757	97.3545	96.5608
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	82	80	ovis_aries_rambouillet	ENSOARP00020009540	98.9276	96.5147
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	100	100	sus_scrofa_largewhite	ENSSSCP00025022208	100	100
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	99.7778	99.7778	sus_scrofa_rongchang	ENSSSCP00030033555	99.7778	99.7778
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	100	100	sus_scrofa_landrace	ENSSSCP00045022236	100	100
ENSSSCG00065049123	sus_scrofa_berkshire	ENSSSCP00065029214	100	100	sus_scrofa_bamei	ENSSSCP00050004914	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression