RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065045479	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	8589 bases	Strand	Minus strand
Position	LUXW01036447.1 : 1794627 - 1803215	RNA binding domain	RAP , FAST_2 , FAST_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065026982	RAP	PF08373	5.2e-08	1
ENSSSCP00065026982	FAST_2	PF08368	1.5e-26	2
ENSSSCP00065026982	FAST_1	PF06743	7.9e-19	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065062240	3362	644aa	ENSSSCP00065026982

Gene Model

Click here to download ENSSSCG00065045479's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065045479's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065004146	29.3062	17.7034	sus_scrofa_berkshire	ENSSSCP00065026982	38.0435	22.9814
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065038121	27.1833	14.6371	sus_scrofa_berkshire	ENSSSCP00065026982	34.3168	18.4783
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065031978	30.6241	14.9492	sus_scrofa_berkshire	ENSSSCP00065026982	32.764	15.9938
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065009692	36.3924	18.5127	sus_scrofa_berkshire	ENSSSCP00065026982	35.7143	18.1677
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065022238	27.3529	16.6176	sus_scrofa_berkshire	ENSSSCP00065026982	28.882	17.5466

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.6025	97.8261	sus_scrofa	ENSSSCP00000049294	95.9214	95.1662
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.6025	97.8261	sus_scrofa_usmarc	ENSSSCP00070016823	95.9214	95.1662
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.7578	98.1366	sus_scrofa_wuzhishan	ENSSSCP00005018433	95.9276	95.3243
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.7578	98.1366	sus_scrofa_jinhua	ENSSSCP00060003734	95.9276	95.3243
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.7578	98.1366	sus_scrofa_pietrain	ENSSSCP00055033647	95.9276	95.3243
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.6025	97.9814	sus_scrofa_tibetan	ENSSSCP00015009202	95.7768	95.1735
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.7578	97.9814	sus_scrofa_hampshire	ENSSSCP00035006285	95.9276	95.1735
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.4472	97.8261	sus_scrofa_meishan	ENSSSCP00040018935	95.6259	95.0226
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	88.354	80.4348	equus_caballus	ENSECAP00000012570	86.2121	78.4848
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	87.1118	79.0373	ovis_aries_rambouillet	ENSOARP00020028838	85.129	77.2382
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	99.8447	99.6894	sus_scrofa_largewhite	ENSSSCP00025007943	99.8447	99.6894
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	98.6025	97.8261	sus_scrofa_rongchang	ENSSSCP00030020902	95.7768	95.0226
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	82.4534	81.0559	sus_scrofa_landrace	ENSSSCP00045003623	94.484	92.8826
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	99.6894	99.6894	sus_scrofa_bamei	ENSSSCP00050042875	99.0741	99.0741
ENSSSCG00065045479	sus_scrofa_berkshire	ENSSSCP00065026982	88.1988	79.0373	bos_taurus	ENSBTAP00000043394	86.0606	77.1212

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression