RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00065043933	Gene ID		Accession	-
Symbol	PRPF40A	Alias	-	Full Name	NA
Status	Confidence	Length	53922 bases	Strand	Minus strand
Position	LUXW01046423.1 : 1871154 - 1925075	RNA binding domain	FF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065026575	FF	PF01846	1.9e-47	1
ENSSSCP00065026575	FF	PF01846	1.9e-47	2
ENSSSCP00065026575	FF	PF01846	1.9e-47	3
ENSSSCP00065026575	FF	PF01846	1.9e-47	4
ENSSSCP00065026575	FF	PF01846	1.9e-47	5
ENSSSCP00065026470	FF	PF01846	2.6e-47	1
ENSSSCP00065026470	FF	PF01846	2.6e-47	2
ENSSSCP00065026470	FF	PF01846	2.6e-47	3
ENSSSCP00065026470	FF	PF01846	2.6e-47	4
ENSSSCP00065026470	FF	PF01846	2.6e-47	5
ENSSSCP00065026476	FF	PF01846	3e-47	1
ENSSSCP00065026476	FF	PF01846	3e-47	2
ENSSSCP00065026476	FF	PF01846	3e-47	3
ENSSSCP00065026476	FF	PF01846	3e-47	4
ENSSSCP00065026476	FF	PF01846	3e-47	5
ENSSSCP00065026569	FF	PF01846	3.5e-47	1
ENSSSCP00065026569	FF	PF01846	3.5e-47	2
ENSSSCP00065026569	FF	PF01846	3.5e-47	3
ENSSSCP00065026569	FF	PF01846	3.5e-47	4
ENSSSCP00065026569	FF	PF01846	3.5e-47	5
ENSSSCP00065026512	FF	PF01846	3.8e-47	1
ENSSSCP00065026512	FF	PF01846	3.8e-47	2
ENSSSCP00065026512	FF	PF01846	3.8e-47	3
ENSSSCP00065026512	FF	PF01846	3.8e-47	4
ENSSSCP00065026512	FF	PF01846	3.8e-47	5
ENSSSCP00065026495	FF	PF01846	4e-47	1
ENSSSCP00065026495	FF	PF01846	4e-47	2
ENSSSCP00065026495	FF	PF01846	4e-47	3
ENSSSCP00065026495	FF	PF01846	4e-47	4
ENSSSCP00065026495	FF	PF01846	4e-47	5
ENSSSCP00065026585	FF	PF01846	4.1e-47	1
ENSSSCP00065026585	FF	PF01846	4.1e-47	2
ENSSSCP00065026585	FF	PF01846	4.1e-47	3
ENSSSCP00065026585	FF	PF01846	4.1e-47	4
ENSSSCP00065026585	FF	PF01846	4.1e-47	5
ENSSSCP00065026480	FF	PF01846	4.3e-47	1
ENSSSCP00065026480	FF	PF01846	4.3e-47	2
ENSSSCP00065026480	FF	PF01846	4.3e-47	3
ENSSSCP00065026480	FF	PF01846	4.3e-47	4
ENSSSCP00065026480	FF	PF01846	4.3e-47	5
ENSSSCP00065026587	FF	PF01846	4.3e-47	1
ENSSSCP00065026587	FF	PF01846	4.3e-47	2
ENSSSCP00065026587	FF	PF01846	4.3e-47	3
ENSSSCP00065026587	FF	PF01846	4.3e-47	4
ENSSSCP00065026587	FF	PF01846	4.3e-47	5
ENSSSCP00065026466	FF	PF01846	2.5e-45	1
ENSSSCP00065026466	FF	PF01846	2.5e-45	2
ENSSSCP00065026466	FF	PF01846	2.5e-45	3
ENSSSCP00065026466	FF	PF01846	2.5e-45	4
ENSSSCP00065026466	FF	PF01846	2.5e-45	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PRPF40A-201	ENSSSCT00065061102	7656	919aa	ENSSSCP00065026466
PRPF40A-202	ENSSSCT00065061109	6164	912aa	ENSSSCP00065026470
PRPF40A-203	ENSSSCT00065061120	3931	930aa	ENSSSCP00065026476
PRPF40A-208	ENSSSCT00065061128	3852	978aa	ENSSSCP00065026480
PRPF40A-207	ENSSSCT00065061150	3813	965aa	ENSSSCP00065026495
PRPF40A-206	ENSSSCT00065061186	3804	962aa	ENSSSCP00065026512
PRPF40A-205	ENSSSCT00065061283	2856	951aa	ENSSSCP00065026569
PRPF40A-204	ENSSSCT00065061298	2943	874aa	ENSSSCP00065026575
PRPF40A-209	ENSSSCT00065061325	2901	966aa	ENSSSCP00065026585
PRPF40A-210	ENSSSCT00065061329	3851	974aa	ENSSSCP00065026587

Gene Model

Click here to download ENSSSCG00065043933's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065043933's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065035651	68.7039	54.2677	sus_scrofa_berkshire	ENSSSCP00065026480	66.6667	52.6585

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.8978	99.8978	sus_scrofa	ENSSSCP00000055947	98.2897	98.2897
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	92.8425	92.229	sus_scrofa_usmarc	ENSSSCP00070044451	96.5957	95.9574
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	98.5685	98.5685	sus_scrofa_wuzhishan	ENSSSCP00005026096	96.6901	96.6901
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.7955	99.7955	sus_scrofa_jinhua	ENSSSCP00060008732	98.1891	98.1891
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.6933	99.6933	sus_scrofa_pietrain	ENSSSCP00055034943	89.5317	89.5317
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.7955	99.7955	sus_scrofa_tibetan	ENSSSCP00015018853	98.1891	98.1891
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.8978	99.8978	sus_scrofa_hampshire	ENSSSCP00035036815	98.2897	98.2897
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.8978	99.8978	sus_scrofa_meishan	ENSSSCP00040044893	98.2897	98.2897
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	98.8753	98.4663	equus_caballus	ENSECAP00000065820	92.9808	92.5962
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	97.7505	97.137	ovis_aries_rambouillet	ENSOARP00020029233	96.371	95.7661
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.8978	99.8978	sus_scrofa_largewhite	ENSSSCP00025022637	98.2897	98.2897
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.8978	99.8978	sus_scrofa_rongchang	ENSSSCP00030019827	98.2897	98.2897
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	97.137	96.9325	sus_scrofa_landrace	ENSSSCP00045000554	97.5359	97.3306
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	99.7955	99.7955	sus_scrofa_bamei	ENSSSCP00050015661	98.1891	98.1891
ENSSSCG00065043933	sus_scrofa_berkshire	ENSSSCP00065026480	92.638	92.4335	bos_taurus	ENSBTAP00000054353	97.5242	97.3089

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression