RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065041229	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	172681 bases	Strand	Minus strand
Position	LUXW01063561.1 : 150125 - 322805	RNA binding domain	R3H , SUZ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065024552	R3H	PF01424	1.3e-11	1
ENSSSCP00065024552	SUZ	PF12752	9e-12	2
ENSSSCP00065024549	R3H	PF01424	1.3e-11	1
ENSSSCP00065024553	R3H	PF01424	1.3e-11	1
ENSSSCP00065024537	R3H	PF01424	1.4e-11	1
ENSSSCP00065024537	SUZ	PF12752	9.4e-12	2
ENSSSCP00065024538	R3H	PF01424	1.4e-11	1
ENSSSCP00065024538	SUZ	PF12752	9.4e-12	2
ENSSSCP00065024542	R3H	PF01424	1.4e-11	1
ENSSSCP00065024542	SUZ	PF12752	9.4e-12	2
ENSSSCP00065024543	R3H	PF01424	1.4e-11	1
ENSSSCP00065024543	SUZ	PF12752	9.4e-12	2
ENSSSCP00065024545	R3H	PF01424	1.4e-11	1
ENSSSCP00065024545	SUZ	PF12752	9.4e-12	2
ENSSSCP00065024554	R3H	PF01424	1.4e-11	1
ENSSSCP00065024554	SUZ	PF12752	9.4e-12	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065056409	3551	842aa	ENSSSCP00065024537
-	ENSSSCT00065056411	3382	842aa	ENSSSCP00065024538
-	ENSSSCT00065056418	3993	842aa	ENSSSCP00065024542
-	ENSSSCT00065056421	3323	842aa	ENSSSCP00065024543
-	ENSSSCT00065056425	3425	842aa	ENSSSCP00065024545
-	ENSSSCT00065056430	3264	808aa	ENSSSCP00065024549
-	ENSSSCT00065056437	3313	810aa	ENSSSCP00065024552
-	ENSSSCT00065056439	3358	808aa	ENSSSCP00065024553
-	ENSSSCT00065056441	3625	842aa	ENSSSCP00065024554

Gene Model

Click here to download ENSSSCG00065041229's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065041229's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065030168	50.5291	38.0071	sus_scrofa_berkshire	ENSSSCP00065024542	68.0523	51.1876
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065015281	44.393	32.5301	sus_scrofa_berkshire	ENSSSCP00065024542	56.8884	41.6865

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	94.5368	94.5368	sus_scrofa	ENSSSCP00000011986	99.7494	99.7494
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	99.8812	99.8812	sus_scrofa_usmarc	ENSSSCP00070024158	99.8812	99.8812
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	99.8812	99.8812	sus_scrofa_wuzhishan	ENSSSCP00005034163	99.8812	99.8812
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	100	99.8812	sus_scrofa_jinhua	ENSSSCP00060010605	100	99.8812
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	72.0903	70.6651	sus_scrofa_pietrain	ENSSSCP00055025903	93.5285	91.6795
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	100	100	sus_scrofa_tibetan	ENSSSCP00015045819	100	100
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	100	100	sus_scrofa_hampshire	ENSSSCP00035030396	100	100
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	100	100	sus_scrofa_meishan	ENSSSCP00040019883	100	100
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	96.3183	93.2304	equus_caballus	ENSECAP00000020613	95.7497	92.68
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	91.3302	88.7173	ovis_aries_rambouillet	ENSOARP00020033377	95.4094	92.6799
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	99.8812	99.8812	sus_scrofa_largewhite	ENSSSCP00025037475	99.8812	99.8812
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	100	100	sus_scrofa_rongchang	ENSSSCP00030022693	100	100
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	100	100	sus_scrofa_landrace	ENSSSCP00045025424	100	100
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	100	100	sus_scrofa_bamei	ENSSSCP00050005844	100	100
ENSSSCG00065041229	sus_scrofa_berkshire	ENSSSCP00065024542	95.6057	92.8741	bos_taurus	ENSBTAP00000062689	96.062	93.3174

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression