RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSSSCG00065038773	Gene ID		Accession	-
Symbol	DHX15	Alias	-	Full Name	Sus scrofa DEAH-box helicase 15 (DHX15), mRNA.
Status	Confidence	Length	117781 bases	Strand	Plus strand
Position	LUXW01011608.1 : 1137165 - 1254945	RNA binding domain	DEAD , HA2 , OB_NTP_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065023020	DEAD	PF00270	1.5e-06	1
ENSSSCP00065023020	HA2	PF04408	2.9e-16	2
ENSSSCP00065023025	DEAD	PF00270	2.1e-06	1
ENSSSCP00065023025	HA2	PF04408	2.1e-21	2
ENSSSCP00065023025	OB_NTP_bind	PF07717	3.1e-22	3
ENSSSCP00065023029	HA2	PF04408	2e-21	1
ENSSSCP00065023029	OB_NTP_bind	PF07717	2.9e-22	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DHX15-201	ENSSSCT00065052981	5819	629aa	ENSSSCP00065023020
DHX15-202	ENSSSCT00065052988	3006	795aa	ENSSSCP00065023025
DHX15-203	ENSSSCT00065052996	2873	766aa	ENSSSCP00065023029

Gene Model

Click here to download ENSSSCG00065038773's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065038773's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065045272	59.2443	36.7072	sus_scrofa_berkshire	ENSSSCP00065023025	55.2201	34.2138
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065006585	19.6498	9.72763	sus_scrofa_berkshire	ENSSSCP00065023025	25.4088	12.5786
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065035950	23.9741	13.2469	sus_scrofa_berkshire	ENSSSCP00065023025	41.8868	23.1447
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065033254	36.0672	22.0356	sus_scrofa_berkshire	ENSSSCP00065023025	45.9119	28.0503
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065035308	52.5032	34.1463	sus_scrofa_berkshire	ENSSSCP00065023025	51.4465	33.4591
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065002254	28.7284	16.248	sus_scrofa_berkshire	ENSSSCP00065023025	46.0377	26.0377
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065009339	64.0114	42.9587	sus_scrofa_berkshire	ENSSSCP00065023025	56.6038	37.9874
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065031844	45.6685	33.5217	sus_scrofa_berkshire	ENSSSCP00065023025	61.0063	44.7799
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065000152	30.2345	17.5879	sus_scrofa_berkshire	ENSSSCP00065023025	45.4088	26.4151
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065034782	36.0104	21.848	sus_scrofa_berkshire	ENSSSCP00065023025	52.4528	31.8239
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065018010	39.2013	26.0799	sus_scrofa_berkshire	ENSSSCP00065023025	60.5031	40.2516
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065032842	54.5961	35.0975	sus_scrofa_berkshire	ENSSSCP00065023025	49.3082	31.6981
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065009108	20.1242	13.913	sus_scrofa_berkshire	ENSSSCP00065023025	20.3774	14.088
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065041977	43.7294	31.2706	sus_scrofa_berkshire	ENSSSCP00065023025	66.6667	47.673
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065009614	57.1207	39.4737	sus_scrofa_berkshire	ENSSSCP00065023025	46.4151	32.0755
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065016609	28.2577	17.4231	sus_scrofa_berkshire	ENSSSCP00065023025	48.5535	29.9371
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065006176	26.6814	16.4819	sus_scrofa_berkshire	ENSSSCP00065023025	45.4088	28.0503
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065004959	31.6754	20.5061	sus_scrofa_berkshire	ENSSSCP00065023025	45.6604	29.5597

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa	ENSSSCP00000009333	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_usmarc	ENSSSCP00070038414	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_wuzhishan	ENSSSCP00005021049	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_jinhua	ENSSSCP00060036184	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_pietrain	ENSSSCP00055028887	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_tibetan	ENSSSCP00015011065	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	97.6101	97.3585	sus_scrofa_hampshire	ENSSSCP00035007322	98.2279	97.9747
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_meishan	ENSSSCP00040014358	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	78.1132	76.3522	equus_caballus	ENSECAP00000073377	95.5385	93.3846
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	99.8742	99.8742	ovis_aries_rambouillet	ENSOARP00020019274	98.2673	98.2673
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_largewhite	ENSSSCP00025003305	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_rongchang	ENSSSCP00030032956	94.1943	94.1943
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_landrace	ENSSSCP00045025791	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	100	100	sus_scrofa_bamei	ENSSSCP00050020508	100	100
ENSSSCG00065038773	sus_scrofa_berkshire	ENSSSCP00065023025	99.7484	99.7484	bos_taurus	ENSBTAP00000011714	99.7484	99.7484

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression