RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065037525	Gene ID		Accession	-
Symbol	FASTK	Alias	-	Full Name	NA
Status	Confidence	Length	4343 bases	Strand	Plus strand
Position	LUXW01015299.1 : 1681904 - 1686246	RNA binding domain	RAP , FAST_2 , FAST_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065022248	RAP	PF08373	4.3e-07	1
ENSSSCP00065022248	FAST_2	PF08368	2.6e-17	2
ENSSSCP00065022248	FAST_1	PF06743	1.1e-14	3
ENSSSCP00065022234	RAP	PF08373	5.9e-07	1
ENSSSCP00065022234	FAST_2	PF08368	3.8e-17	2
ENSSSCP00065022234	FAST_1	PF06743	7.5e-15	3
ENSSSCP00065022246	RAP	PF08373	6.2e-07	1
ENSSSCP00065022246	FAST_2	PF08368	4.1e-17	2
ENSSSCP00065022246	FAST_1	PF06743	8e-15	3
ENSSSCP00065022238	FAST_2	PF08368	6.7e-17	1
ENSSSCP00065022238	FAST_1	PF06743	1.1e-14	2
ENSSSCP00065022236	FAST_1	PF06743	1.1e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FASTK-201	ENSSSCT00065051235	1825	533aa	ENSSSCP00065022234
FASTK-202	ENSSSCT00065051237	1854	587aa	ENSSSCP00065022236
FASTK-204	ENSSSCT00065051243	2204	680aa	ENSSSCP00065022238
FASTK-203	ENSSSCT00065051254	1925	554aa	ENSSSCP00065022246
FASTK-205	ENSSSCT00065051259	1315	401aa	ENSSSCP00065022248

Gene Model

Click here to download ENSSSCG00065037525's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065037525's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065009692	31.6456	18.1962	sus_scrofa_berkshire	ENSSSCP00065022238	29.4118	16.9118
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065038121	24.1082	13.5301	sus_scrofa_berkshire	ENSSSCP00065022238	28.8235	16.1765
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065004146	24.5215	12.6794	sus_scrofa_berkshire	ENSSSCP00065022238	30.1471	15.5882
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065031978	25.1089	13.643	sus_scrofa_berkshire	ENSSSCP00065022238	25.4412	13.8235
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065026982	28.882	17.5466	sus_scrofa_berkshire	ENSSSCP00065022238	27.3529	16.6176

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	73.5294	72.6471	sus_scrofa	ENSSSCP00000023177	92.2509	91.1439
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	85	83.8235	sus_scrofa_usmarc	ENSSSCP00070031814	91.6006	90.3328
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	78.0882	77.6471	sus_scrofa_jinhua	ENSSSCP00060030745	95.8484	95.3069
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	99.4118	99.2647	sus_scrofa_pietrain	ENSSSCP00055026542	99.4118	99.2647
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	70.5882	68.5294	equus_caballus	ENSECAP00000045687	87.1143	84.5735
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	70.4412	66.4706	ovis_aries_rambouillet	ENSOARP00020018988	76.5176	72.2045
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	71.3235	70.7353	sus_scrofa_rongchang	ENSSSCP00030005510	89.3186	88.582
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	99.5588	99.4118	sus_scrofa_landrace	ENSSSCP00045014251	99.5588	99.4118
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	98.9706	98.6765	sus_scrofa_bamei	ENSSSCP00050024936	98.9706	98.6765
ENSSSCG00065037525	sus_scrofa_berkshire	ENSSSCP00065022238	69.1176	66.7647	bos_taurus	ENSBTAP00000041377	86.7159	83.7638

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression