RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00065035978	Gene ID		Accession	-
Symbol	NKRF	Alias	-	Full Name	NA
Status	Confidence	Length	17420 bases	Strand	Minus strand
Position	LUXW01026279.1 : 1544767 - 1562186	RNA binding domain	G-patch , R3H
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065021205	G-patch	PF01585	1.2e-13	1
ENSSSCP00065021205	R3H	PF01424	7.1e-12	2
ENSSSCP00065021201	G-patch	PF01585	1.5e-13	1
ENSSSCP00065021201	R3H	PF01424	8.8e-12	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NKRF-202	ENSSSCT00065049037	6375	784aa	ENSSSCP00065021201
NKRF-201	ENSSSCT00065049042	5703	705aa	ENSSSCP00065021205

Gene Model

Click here to download ENSSSCG00065035978's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065035978's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065032643	53.4483	33.6207	sus_scrofa_berkshire	ENSSSCP00065021201	7.90816	4.97449
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065000164	38.9365	20.9262	sus_scrofa_berkshire	ENSSSCP00065021201	28.9541	15.5612

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	100	sus_scrofa	ENSSSCP00000013418	100	100
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	88.0102	88.0102	sus_scrofa_usmarc	ENSSSCP00070049604	100	100
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	88.0102	87.8827	sus_scrofa_wuzhishan	ENSSSCP00005035900	100	99.8551
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	99.8725	sus_scrofa_jinhua	ENSSSCP00060022457	100	99.8725
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	100	sus_scrofa_pietrain	ENSSSCP00055043347	100	100
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	89.4133	88.9031	sus_scrofa_tibetan	ENSSSCP00015004401	99.4326	98.8652
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	100	sus_scrofa_hampshire	ENSSSCP00035043901	100	100
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	99.8725	sus_scrofa_meishan	ENSSSCP00040020177	100	99.8725
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	99.4898	98.7245	equus_caballus	ENSECAP00000019938	99.4898	98.7245
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	100	sus_scrofa_largewhite	ENSSSCP00025043397	100	100
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	99.8725	sus_scrofa_rongchang	ENSSSCP00030023474	100	99.8725
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	100	sus_scrofa_landrace	ENSSSCP00045042519	100	100
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	100	99.8725	sus_scrofa_bamei	ENSSSCP00050031280	100	99.8725
ENSSSCG00065035978	sus_scrofa_berkshire	ENSSSCP00065021201	98.9796	97.7041	bos_taurus	ENSBTAP00000065540	98.9796	97.7041

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression