RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065034168	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	145283 bases	Strand	Plus strand
Position	LUXW01040752.1 : 473763 - 619045	RNA binding domain	R3H
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065019960	R3H	PF01424	6.7e-20	1
ENSSSCP00065019968	R3H	PF01424	6.8e-20	1
ENSSSCP00065019965	R3H	PF01424	7e-20	1
ENSSSCP00065019963	R3H	PF01424	7.1e-20	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065046485	5602	1086aa	ENSSSCP00065019959
-	ENSSSCT00065046492	3525	1084aa	ENSSSCP00065019960
-	ENSSSCT00065046496	5478	1134aa	ENSSSCP00065019963
-	ENSSSCT00065046502	4940	1119aa	ENSSSCP00065019965
-	ENSSSCT00065046506	3709	1093aa	ENSSSCP00065019968

Gene Model

Click here to download ENSSSCG00065034168's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065034168's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065037232	50.6211	36.9565	sus_scrofa_berkshire	ENSSSCP00065019963	14.3739	10.4938
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065037304	38.9121	19.6653	sus_scrofa_berkshire	ENSSSCP00065019963	8.20106	4.14462
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065040691	39.6476	23.7885	sus_scrofa_berkshire	ENSSSCP00065019963	7.93651	4.7619

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	98.4127	98.4127	sus_scrofa	ENSSSCP00000011727	99.9105	99.9105
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	98.5891	98.5891	sus_scrofa_usmarc	ENSSSCP00070030926	97.1329	97.1329
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	98.5009	98.5009	sus_scrofa_wuzhishan	ENSSSCP00005031059	97.046	97.046
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	99.9118	99.9118	sus_scrofa_jinhua	ENSSSCP00060046370	99.9118	99.9118
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	98.5891	98.5891	sus_scrofa_pietrain	ENSSSCP00055023054	99.9106	99.9106
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	97.3545	97.3545	sus_scrofa_tibetan	ENSSSCP00015024753	97.0976	97.0976
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	96.2963	96.2963	sus_scrofa_hampshire	ENSSSCP00035000215	97.0667	97.0667
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	99.9118	99.9118	sus_scrofa_meishan	ENSSSCP00040016118	99.9118	99.9118
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	93.739	90.2116	equus_caballus	ENSECAP00000029751	88.1426	84.8259
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	94.1799	91.2698	ovis_aries_rambouillet	ENSOARP00020012551	93.4383	90.5512
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	97.3545	97.3545	sus_scrofa_largewhite	ENSSSCP00025036181	97.0976	97.0976
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	99.9118	99.9118	sus_scrofa_rongchang	ENSSSCP00030031445	99.9118	99.9118
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	98.6772	98.6772	sus_scrofa_landrace	ENSSSCP00045001297	100	100
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	99.9118	99.9118	sus_scrofa_bamei	ENSSSCP00050033873	99.9118	99.9118
ENSSSCG00065034168	sus_scrofa_berkshire	ENSSSCP00065019963	94.7972	91.4462	bos_taurus	ENSBTAP00000042616	96.3262	92.9212

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression