RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065031342	Gene ID		Accession	-
Symbol	DHX38	Alias	-	Full Name	NA
Status	Confidence	Length	19106 bases	Strand	Minus strand
Position	LUXW01066854.1 : 369141 - 388246	RNA binding domain	DEAD , HA2 , OB_NTP_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065018023	DEAD	PF00270	5.3e-07	1
ENSSSCP00065018023	HA2	PF04408	1.4e-18	2
ENSSSCP00065018023	OB_NTP_bind	PF07717	8.4e-16	3
ENSSSCP00065018036	DEAD	PF00270	5.5e-07	1
ENSSSCP00065018036	HA2	PF04408	1.2e-18	2
ENSSSCP00065018010	DEAD	PF00270	5.9e-07	1
ENSSSCP00065018010	HA2	PF04408	1.5e-18	2
ENSSSCP00065018010	OB_NTP_bind	PF07717	8.9e-16	3
ENSSSCP00065018032	DEAD	PF00270	5.9e-07	1
ENSSSCP00065018032	HA2	PF04408	1.5e-18	2
ENSSSCP00065018032	OB_NTP_bind	PF07717	8.9e-16	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DHX38-201	ENSSSCT00065042490	5337	1227aa	ENSSSCP00065018010
DHX38-202	ENSSSCT00065042519	5160	1168aa	ENSSSCP00065018023
DHX38-203	ENSSSCT00065042542	4436	1227aa	ENSSSCP00065018032
DHX38-204	ENSSSCT00065042548	4141	1185aa	ENSSSCP00065018036

Gene Model

Click here to download ENSSSCG00065031342's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065031342's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065045272	50.0675	27.9352	sus_scrofa_berkshire	ENSSSCP00065018010	30.2363	16.8704
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065006585	24.4163	11.1868	sus_scrofa_berkshire	ENSSSCP00065018010	20.4564	9.37245
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065035950	25.6299	13.7509	sus_scrofa_berkshire	ENSSSCP00065018010	29.0139	15.5664
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065033254	40.7115	22.1344	sus_scrofa_berkshire	ENSSSCP00065018010	33.5778	18.2559
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065035308	55.8408	35.3017	sus_scrofa_berkshire	ENSSSCP00065018010	35.4523	22.4124
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065002254	33.0455	18.9168	sus_scrofa_berkshire	ENSSSCP00065018010	34.3113	19.6414
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065009339	62.7312	42.532	sus_scrofa_berkshire	ENSSSCP00065018010	35.9413	24.3684
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065031844	54.8964	37.0998	sus_scrofa_berkshire	ENSSSCP00065018010	47.5143	32.1108
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065000152	36.3484	19.7655	sus_scrofa_berkshire	ENSSSCP00065018010	35.3708	19.2339
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065034782	39.3782	24.1796	sus_scrofa_berkshire	ENSSSCP00065018010	37.1638	22.8199
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065023025	60.5031	40.2516	sus_scrofa_berkshire	ENSSSCP00065018010	39.2013	26.0799
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065032842	47.2145	27.298	sus_scrofa_berkshire	ENSSSCP00065018010	27.6284	15.9739
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065009108	31.1801	17.1429	sus_scrofa_berkshire	ENSSSCP00065018010	20.4564	11.2469
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065041977	52.9703	36.6337	sus_scrofa_berkshire	ENSSSCP00065018010	52.3227	36.1858
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065009614	60.5263	41.0217	sus_scrofa_berkshire	ENSSSCP00065018010	31.8663	21.5974
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065016609	35.5783	19.1801	sus_scrofa_berkshire	ENSSSCP00065018010	39.6088	21.3529
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065006176	29.3422	17.1471	sus_scrofa_berkshire	ENSSSCP00065018010	32.3553	18.9079
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065004959	34.904	21.2914	sus_scrofa_berkshire	ENSSSCP00065018010	32.5998	19.8859

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	100	100	sus_scrofa	ENSSSCP00000002966	100	100
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	96.1695	95.436	sus_scrofa_usmarc	ENSSSCP00070002640	98.2515	97.5021
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	98.9405	98.859	sus_scrofa_wuzhishan	ENSSSCP00005021265	98.9405	98.859
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	100	99.9185	sus_scrofa_jinhua	ENSSSCP00060026636	100	99.9185
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	100	99.9185	sus_scrofa_pietrain	ENSSSCP00055034218	100	99.9185
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	100	99.9185	sus_scrofa_tibetan	ENSSSCP00015044968	100	99.9185
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	97.7995	97.7995	sus_scrofa_hampshire	ENSSSCP00035029661	100	100
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	100	99.837	sus_scrofa_meishan	ENSSSCP00040023606	100	99.837
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	99.4295	99.1035	equus_caballus	ENSECAP00000028501	96.5954	96.2787
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	99.2665	98.696	ovis_aries_rambouillet	ENSOARP00020013928	99.3475	98.7765
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	100	99.9185	sus_scrofa_largewhite	ENSSSCP00025022511	100	99.9185
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	100	99.9185	sus_scrofa_rongchang	ENSSSCP00030044525	100	99.9185
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	100	100	sus_scrofa_landrace	ENSSSCP00045025145	100	100
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	95.599	95.0285	sus_scrofa_bamei	ENSSSCP00050007657	97.75	97.1667
ENSSSCG00065031342	sus_scrofa_berkshire	ENSSSCP00065018010	99.2665	98.6145	bos_taurus	ENSBTAP00000042866	99.2665	98.6145

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression