RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065028608	Gene ID		Accession	-
Symbol	TAF1B	Alias	-	Full Name	NA
Status	Confidence	Length	59160 bases	Strand	Plus strand
Position	LUXW01052873.1 : 763635 - 822794	RNA binding domain	zf-RRN7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065016285	zf-RRN7	PF11781	1.4e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TAF1B-201	ENSSSCT00065038572	2388	589aa	ENSSSCP00065016285

Gene Model

Click here to download ENSSSCG00065028608's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065028608's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065028608

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa	ENSSSCP00000009206	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_usmarc	ENSSSCP00070027002	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	94.2275	93.2088	sus_scrofa_wuzhishan	ENSSSCP00005004231	98.4043	97.3404
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_jinhua	ENSSSCP00060032261	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_pietrain	ENSSSCP00055024488	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_tibetan	ENSSSCP00015000259	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_hampshire	ENSSSCP00035002850	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	91.3413	89.4737	sus_scrofa_meishan	ENSSSCP00040014025	94.8854	92.9453
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	94.5671	88.6248	equus_caballus	ENSECAP00000020766	87.1674	81.6901
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	94.0577	87.4363	ovis_aries_rambouillet	ENSOARP00020011024	93.8983	87.2881
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_largewhite	ENSSSCP00025013394	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_rongchang	ENSSSCP00030034349	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_landrace	ENSSSCP00045031743	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	100	100	sus_scrofa_bamei	ENSSSCP00050012909	100	100
ENSSSCG00065028608	sus_scrofa_berkshire	ENSSSCP00065016285	94.0577	87.7759	bos_taurus	ENSBTAP00000041230	93.8983	87.6271

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression