RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065028200	Gene ID		Accession	-
Symbol	STAR	Alias	-	Full Name	Sus scrofa steroidogenic acute regulatory protein (STAR), mRNA.
Status	Confidence	Length	36578 bases	Strand	Plus strand
Position	LUXW01015518.1 : 1908887 - 1945464	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065016039	LSM	PF01423	3.5e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
STAR-201	ENSSSCT00065038029	6317	133aa	ENSSSCP00065016039
STAR-202	ENSSSCT00065038034	2732	302aa	ENSSSCP00065016042
STAR-203	ENSSSCT00065038046	2760	285aa	ENSSSCP00065016046

Gene Model

Click here to download ENSSSCG00065028200's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065028200's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065008941	43.1925	20.1878	sus_scrofa_berkshire	ENSSSCP00065016042	30.4636	14.2384
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065034982	42.4779	21.2389	sus_scrofa_berkshire	ENSSSCP00065016042	31.7881	15.894
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065024512	16.9291	8.66142	sus_scrofa_berkshire	ENSSSCP00065016042	14.2384	7.28477
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065021038	41.3146	18.7793	sus_scrofa_berkshire	ENSSSCP00065016042	29.1391	13.245
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065045965	15.9944	8.48401	sus_scrofa_berkshire	ENSSSCP00065016042	38.0795	20.1987

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	90.0662	88.4106	sus_scrofa	ENSSSCP00000059533	95.4386	93.6842
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	90.0662	88.4106	sus_scrofa_usmarc	ENSSSCP00070045796	95.4386	93.6842
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	99.6689	sus_scrofa_wuzhishan	ENSSSCP00005036685	100	99.6689
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	99.6689	sus_scrofa_jinhua	ENSSSCP00060048547	100	99.6689
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	100	sus_scrofa_pietrain	ENSSSCP00055010463	100	100
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	99.6689	99.6689	sus_scrofa_tibetan	ENSSSCP00015024041	99.6689	99.6689
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	100	sus_scrofa_hampshire	ENSSSCP00035017525	100	100
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	99.6689	sus_scrofa_meishan	ENSSSCP00040018043	100	99.6689
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	85.4305	79.4702	ovis_aries_rambouillet	ENSOARP00020026204	90.5263	84.2105
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	100	sus_scrofa_largewhite	ENSSSCP00025015947	100	100
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	99.6689	sus_scrofa_rongchang	ENSSSCP00030042989	100	99.6689
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	100	sus_scrofa_landrace	ENSSSCP00045043501	100	100
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	100	100	sus_scrofa_bamei	ENSSSCP00050021985	100	100
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	85.0993	79.1391	bos_taurus	ENSBTAP00000068322	90.1754	83.8596
ENSSSCG00065028200	sus_scrofa_berkshire	ENSSSCP00065016042	85.4305	79.8013	bos_taurus	ENSBTAP00000044633	90.5263	84.5614

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression