RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065027201	Gene ID		Accession	-
Symbol	GTPBP4	Alias	-	Full Name	NA
Status	Confidence	Length	18735 bases	Strand	Plus strand
Position	LUXW01055596.1 : 360380 - 379114	RNA binding domain	NOG1 , NOGCT , MMR_HSR1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065015395	NOG1	PF06858	1.3e-26	1
ENSSSCP00065015395	NOGCT	PF08155	8.9e-21	2
ENSSSCP00065015395	MMR_HSR1	PF01926	1.1e-17	3
ENSSSCP00065015390	NOG1	PF06858	1.3e-26	1
ENSSSCP00065015390	NOGCT	PF08155	2.6e-21	2
ENSSSCP00065015390	MMR_HSR1	PF01926	1.1e-17	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
GTPBP4-201	ENSSSCT00065036649	2493	634aa	ENSSSCP00065015390
GTPBP4-202	ENSSSCT00065036660	2391	622aa	ENSSSCP00065015395

Gene Model

Click here to download ENSSSCG00065027201's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065027201's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065001095	33.0166	16.3895	sus_scrofa_berkshire	ENSSSCP00065015390	21.9243	10.8833
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065025333	32.0197	17.4877	sus_scrofa_berkshire	ENSSSCP00065015390	20.5047	11.1987
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065028999	35.9813	17.5234	sus_scrofa_berkshire	ENSSSCP00065015390	24.2902	11.8297
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065023842	39.782	21.2534	sus_scrofa_berkshire	ENSSSCP00065015390	23.0284	12.3028

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa	ENSSSCP00000024246	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_usmarc	ENSSSCP00070008581	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	96.6877	95.8991	sus_scrofa_wuzhishan	ENSSSCP00005006655	96.9937	96.2025
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_jinhua	ENSSSCP00060042751	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_pietrain	ENSSSCP00055039351	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	95.7413	94.9527	sus_scrofa_tibetan	ENSSSCP00015016558	95.2904	94.5055
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_hampshire	ENSSSCP00035036354	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_meishan	ENSSSCP00040000450	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	92.5868	87.6972	equus_caballus	ENSECAP00000002904	97.3466	92.2056
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	97.0032	93.3754	ovis_aries_rambouillet	ENSOARP00020011165	88.3621	85.0575
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_largewhite	ENSSSCP00025011173	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_rongchang	ENSSSCP00030045915	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_landrace	ENSSSCP00045029393	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	100	100	sus_scrofa_bamei	ENSSSCP00050000926	100	100
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	97.0032	93.2177	bos_taurus	ENSBTAP00000019864	97.0032	93.2177
ENSSSCG00065027201	sus_scrofa_berkshire	ENSSSCP00065015390	24.9211	21.4511	bos_taurus	ENSBTAP00000066079	90.8046	78.1609

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression