RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065027099	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	214423 bases	Strand	Minus strand
Position	LUXW01056243.1 : 1270394 - 1484816	RNA binding domain	DEAD , rRNA_proc-arch
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065015338	DEAD	PF00270	7e-17	1
ENSSSCP00065015338	rRNA_proc-arch	PF13234	2.3e-87	2
ENSSSCP00065015343	DEAD	PF00270	7.2e-17	1
ENSSSCP00065015343	rRNA_proc-arch	PF13234	2.4e-87	2
ENSSSCP00065015349	DEAD	PF00270	7.5e-17	1
ENSSSCP00065015349	rRNA_proc-arch	PF13234	2.5e-87	2
ENSSSCP00065015332	DEAD	PF00270	7.6e-17	1
ENSSSCP00065015332	rRNA_proc-arch	PF13234	2.5e-87	2
ENSSSCP00065015335	DEAD	PF00270	7.6e-17	1
ENSSSCP00065015335	rRNA_proc-arch	PF13234	2.5e-87	2
ENSSSCP00065015341	DEAD	PF00270	7.7e-17	1
ENSSSCP00065015341	rRNA_proc-arch	PF13234	2.6e-87	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065036499	5268	1042aa	ENSSSCP00065015332
-	ENSSSCT00065036507	6280	1031aa	ENSSSCP00065015335
-	ENSSSCT00065036515	3236	996aa	ENSSSCP00065015338
-	ENSSSCT00065036521	3402	1047aa	ENSSSCP00065015341
-	ENSSSCT00065036525	3899	1014aa	ENSSSCP00065015343
-	ENSSSCT00065036534	3207	961aa	ENSSSCP00065015349

Gene Model

Click here to download ENSSSCG00065027099's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065027099's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065032437	14.4803	6.08261	sus_scrofa_berkshire	ENSSSCP00065015341	30.468	12.7985
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065010078	15.4739	7.88201	sus_scrofa_berkshire	ENSSSCP00065015341	30.5635	15.5683
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065026090	18.7793	9.85915	sus_scrofa_berkshire	ENSSSCP00065015341	30.5635	16.0458
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065041873	27.0992	13.0725	sus_scrofa_berkshire	ENSSSCP00065015341	27.1251	13.085
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065017276	23.4618	11.7647	sus_scrofa_berkshire	ENSSSCP00065015341	33.1423	16.6189
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065013663	45.8333	31.0096	sus_scrofa_berkshire	ENSSSCP00065015341	54.6323	36.9627
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065031576	15.1182	7.29421	sus_scrofa_berkshire	ENSSSCP00065015341	35.4346	17.0965

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	96.6571	95.7975	sus_scrofa	ENSSSCP00000017920	97.1209	96.2572
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	100	100	sus_scrofa_usmarc	ENSSSCP00070003307	100	100
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	96.5616	95.702	sus_scrofa_wuzhishan	ENSSSCP00005012251	97.1182	96.2536
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	100	100	sus_scrofa_jinhua	ENSSSCP00060024471	100	100
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	100	100	sus_scrofa_pietrain	ENSSSCP00055025380	100	100
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	100	100	sus_scrofa_tibetan	ENSSSCP00015009598	100	100
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	96.7526	95.893	sus_scrofa_hampshire	ENSSSCP00035043482	97.2169	96.3532
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	96.6571	95.7975	sus_scrofa_meishan	ENSSSCP00040020864	97.1209	96.2572
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	96.3706	94.7469	equus_caballus	ENSECAP00000057963	96.0038	94.3863
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	96.1796	95.0334	ovis_aries_rambouillet	ENSOARP00020015392	96.6411	95.4894
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	100	100	sus_scrofa_largewhite	ENSSSCP00025033012	100	100
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	100	100	sus_scrofa_rongchang	ENSSSCP00030045441	100	100
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	96.6571	95.7975	sus_scrofa_landrace	ENSSSCP00045007733	97.1209	96.2572
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	100	100	sus_scrofa_bamei	ENSSSCP00050036017	100	100
ENSSSCG00065027099	sus_scrofa_berkshire	ENSSSCP00065015341	96.2751	95.0334	bos_taurus	ENSBTAP00000044575	96.9231	95.6731

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression