RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065026645	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	162183 bases	Strand	Minus strand
Position	LUXW01020044.1 : 263221 - 425403	RNA binding domain	R3H , SUZ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065015287	R3H	PF01424	7.4e-10	1
ENSSSCP00065015287	SUZ	PF12752	3.2e-10	2
ENSSSCP00065015257	R3H	PF01424	7.4e-10	1
ENSSSCP00065015257	SUZ	PF12752	3.3e-10	2
ENSSSCP00065015229	R3H	PF01424	7.6e-10	1
ENSSSCP00065015184	R3H	PF01424	7.7e-10	1
ENSSSCP00065015184	SUZ	PF12752	3.5e-10	2
ENSSSCP00065015273	R3H	PF01424	7.8e-10	1
ENSSSCP00065015273	SUZ	PF12752	3.3e-10	2
ENSSSCP00065015286	R3H	PF01424	7.8e-10	1
ENSSSCP00065015286	SUZ	PF12752	3.3e-10	2
ENSSSCP00065015209	R3H	PF01424	8.1e-10	1
ENSSSCP00065015209	SUZ	PF12752	3.4e-10	2
ENSSSCP00065015281	R3H	PF01424	8.5e-10	1
ENSSSCP00065015281	SUZ	PF12752	2e-08	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065036205	5323	1024aa	ENSSSCP00065015184
-	ENSSSCT00065036249	5269	1006aa	ENSSSCP00065015209
-	ENSSSCT00065036288	5227	992aa	ENSSSCP00065015229
-	ENSSSCT00065036327	5221	990aa	ENSSSCP00065015257
-	ENSSSCT00065036362	4227	988aa	ENSSSCP00065015273
-	ENSSSCT00065036374	4045	1079aa	ENSSSCP00065015281
-	ENSSSCT00065036383	4109	988aa	ENSSSCP00065015286
-	ENSSSCT00065036389	5072	966aa	ENSSSCP00065015287

Gene Model

Click here to download ENSSSCG00065026645's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065026645's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065030168	59.5238	46.2081	sus_scrofa_berkshire	ENSSSCP00065015281	62.5579	48.5635
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065024542	56.8884	41.6865	sus_scrofa_berkshire	ENSSSCP00065015281	44.393	32.5301

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	99.9073	99.9073	sus_scrofa	ENSSSCP00000045068	99.9073	99.9073
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	91.0102	91.0102	sus_scrofa_usmarc	ENSSSCP00070049763	94.4231	94.4231
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	99.9073	99.9073	sus_scrofa_wuzhishan	ENSSSCP00005028732	99.9073	99.9073
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	90.9175	90.9175	sus_scrofa_jinhua	ENSSSCP00060031286	94.3269	94.3269
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	100	100	sus_scrofa_pietrain	ENSSSCP00055034585	100	100
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	90.6395	90.6395	sus_scrofa_tibetan	ENSSSCP00015036707	93.499	93.499
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	91.0102	91.0102	sus_scrofa_hampshire	ENSSSCP00035031342	94.4231	94.4231
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	99.9073	99.9073	sus_scrofa_meishan	ENSSSCP00040006269	99.9073	99.9073
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	91.6589	89.9907	equus_caballus	ENSECAP00000027472	92.6898	91.0028
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	87.7664	86.2836	ovis_aries_rambouillet	ENSOARP00020001871	93.9484	92.3611
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	100	100	sus_scrofa_largewhite	ENSSSCP00025011310	100	100
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	90.9175	90.9175	sus_scrofa_rongchang	ENSSSCP00030030341	94.3269	94.3269
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	100	100	sus_scrofa_landrace	ENSSSCP00045043698	100	100
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	99.9073	99.9073	sus_scrofa_bamei	ENSSSCP00050005577	99.9073	99.9073
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	90.3614	89.2493	bos_taurus	ENSBTAP00000024431	98.5844	97.3711
ENSSSCG00065026645	sus_scrofa_berkshire	ENSSSCP00065015281	37.9055	34.569	bos_taurus	ENSBTAP00000068006	88.7202	80.9111

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression