RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065026270	Gene ID		Accession	-
Symbol	UPF1	Alias	-	Full Name	NA
Status	Confidence	Length	38516 bases	Strand	Plus strand
Position	LUXW01007133.1 : 2624029 - 2662544	RNA binding domain	ResIII , UPF1_1B_dom , UPF1_Zn_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065014750	ResIII	PF04851	3.7e-05	1
ENSSSCP00065014750	UPF1_1B_dom	PF18141	1.9e-32	2
ENSSSCP00065014750	UPF1_Zn_bind	PF09416	3.3e-77	3
ENSSSCP00065014756	ResIII	PF04851	3.7e-05	1
ENSSSCP00065014756	UPF1_1B_dom	PF18141	1.9e-32	2
ENSSSCP00065014756	UPF1_Zn_bind	PF09416	3.3e-77	3
ENSSSCP00065014748	ResIII	PF04851	4.4e-05	1
ENSSSCP00065014748	UPF1_1B_dom	PF18141	6.6e-29	2
ENSSSCP00065014748	UPF1_Zn_bind	PF09416	3.9e-77	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
UPF1-201	ENSSSCT00065035298	5590	1139aa	ENSSSCP00065014748
UPF1-202	ENSSSCT00065035302	5030	1043aa	ENSSSCP00065014750
UPF1-203	ENSSSCT00065035317	5030	1043aa	ENSSSCP00065014756

Gene Model

Click here to download ENSSSCG00065026270's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065026270's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065015981	30.8858	19.5804	sus_scrofa_berkshire	ENSSSCP00065014748	23.266	14.7498
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065033872	25.9605	16.0955	sus_scrofa_berkshire	ENSSSCP00065014748	43.8982	27.2169
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014646	16.5553	9.51157	sus_scrofa_berkshire	ENSSSCP00065014748	28.2704	16.2423
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065005384	24.3363	15.1327	sus_scrofa_berkshire	ENSSSCP00065014748	24.144	15.0132
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065042241	28.0603	16.29	sus_scrofa_berkshire	ENSSSCP00065014748	26.1633	15.1888
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065035803	19.9732	11.3941	sus_scrofa_berkshire	ENSSSCP00065014748	26.1633	14.9254
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065035672	14.7982	8.03438	sus_scrofa_berkshire	ENSSSCP00065014748	34.7673	18.8762
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065028383	27.0729	17.3826	sus_scrofa_berkshire	ENSSSCP00065014748	23.7928	15.2766
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065004140	12.2103	6.60671	sus_scrofa_berkshire	ENSSSCP00065014748	30.9921	16.7691

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	98.9464	98.9464	sus_scrofa	ENSSSCP00000036535	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	98.9464	98.9464	sus_scrofa_usmarc	ENSSSCP00070023929	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	91.0448	90.957	sus_scrofa_wuzhishan	ENSSSCP00005033152	99.2345	99.1388
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	100	100	sus_scrofa_jinhua	ENSSSCP00060023858	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	98.9464	98.9464	sus_scrofa_pietrain	ENSSSCP00055031923	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	100	100	sus_scrofa_tibetan	ENSSSCP00015034147	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	100	100	sus_scrofa_hampshire	ENSSSCP00035039257	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	100	100	sus_scrofa_meishan	ENSSSCP00040036664	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	98.5075	98.5075	equus_caballus	ENSECAP00000057276	99.5563	99.5563
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	98.8587	98.8587	ovis_aries_rambouillet	ENSOARP00020004358	99.9113	99.9113
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	100	100	sus_scrofa_largewhite	ENSSSCP00025019848	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	100	100	sus_scrofa_rongchang	ENSSSCP00030029175	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	100	100	sus_scrofa_landrace	ENSSSCP00045033952	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	100	100	sus_scrofa_bamei	ENSSSCP00050036824	100	100
ENSSSCG00065026270	sus_scrofa_berkshire	ENSSSCP00065014748	98.8587	98.8587	bos_taurus	ENSBTAP00000027868	99.9113	99.9113

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression