RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00065023239	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	50245 bases	Strand	Plus strand
Position	LUXW01033973.1 : 498488 - 548732	RNA binding domain	Aconitase , Aconitase_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065012667	Aconitase	PF00330	5.8e-147	1
ENSSSCP00065012667	Aconitase	PF00330	5.8e-147	2
ENSSSCP00065012667	Aconitase_C	PF00694	2.4e-30	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065030946	6012	945aa	ENSSSCP00065012667

Gene Model

Click here to download ENSSSCG00065023239's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065023239's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012224	44.2786	25.2488	sus_scrofa_berkshire	ENSSSCP00065012667	37.672	21.4815
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065000350	78.157	60.0683	sus_scrofa_berkshire	ENSSSCP00065012667	72.6984	55.873

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.836	98.2011	sus_scrofa	ENSSSCP00000001913	96.9886	96.3655
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.9418	98.3069	sus_scrofa_usmarc	ENSSSCP00070033178	96.9917	96.3693
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.9418	98.3069	sus_scrofa_wuzhishan	ENSSSCP00005029693	90.5131	89.9322
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.9418	98.3069	sus_scrofa_jinhua	ENSSSCP00060021364	94.0644	93.4608
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.9418	98.3069	sus_scrofa_pietrain	ENSSSCP00055044394	94.0644	93.4608
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.9418	98.3069	sus_scrofa_tibetan	ENSSSCP00015039169	94.0644	93.4608
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	100	100	sus_scrofa_hampshire	ENSSSCP00035001624	100	100
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.9418	98.3069	sus_scrofa_meishan	ENSSSCP00040028501	94.0644	93.4608
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	97.5661	95.2381	equus_caballus	ENSECAP00000026626	95.544	93.2643
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.4127	96.4021	ovis_aries_rambouillet	ENSOARP00020024499	96.473	94.5021
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	100	100	sus_scrofa_largewhite	ENSSSCP00025036494	100	100
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	100	100	sus_scrofa_rongchang	ENSSSCP00030039609	100	100
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.9418	98.3069	sus_scrofa_landrace	ENSSSCP00045022882	94.0644	93.4608
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	100	100	sus_scrofa_bamei	ENSSSCP00050038503	100	100
ENSSSCG00065023239	sus_scrofa_berkshire	ENSSSCP00065012667	98.3069	96.0847	bos_taurus	ENSBTAP00000058582	96.3693	94.1909

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression