RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065022432	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Sus scrofa aconitase 2 (ACO2), mRNA.
Status	Confidence	Length	57197 bases	Strand	Minus strand
Position	LUXW01027208.1 : 96815 - 154011	RNA binding domain	Aconitase , Aconitase_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065012228	Aconitase	PF00330	8.8e-151	1
ENSSSCP00065012228	Aconitase_C	PF00694	1.1e-48	2
ENSSSCP00065012224	Aconitase	PF00330	9.4e-151	1
ENSSSCP00065012224	Aconitase_C	PF00694	1.2e-48	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065029894	2610	804aa	ENSSSCP00065012224
-	ENSSSCT00065029907	2667	781aa	ENSSSCP00065012228

Gene Model

Click here to download ENSSSCG00065022432's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065022432's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012667	37.672	21.4815	sus_scrofa_berkshire	ENSSSCP00065012224	44.2786	25.2488
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065000350	41.1832	25.1422	sus_scrofa_berkshire	ENSSSCP00065012224	45.0249	27.4876

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	96.8905	96.8905	sus_scrofa	ENSSSCP00000076303	99.8718	99.8718
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	94.9005	94.5274	sus_scrofa_usmarc	ENSSSCP00070048417	98.5788	98.1912
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	99.5025	99.5025	sus_scrofa_wuzhishan	ENSSSCP00005002569	99.5025	99.5025
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	99.7512	99.7512	sus_scrofa_jinhua	ENSSSCP00060031356	99.7512	99.7512
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	100	100	sus_scrofa_pietrain	ENSSSCP00055029978	100	100
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	99.7512	99.7512	sus_scrofa_tibetan	ENSSSCP00015005965	99.7512	99.7512
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	97.0149	97.0149	sus_scrofa_hampshire	ENSSSCP00035026612	96.7742	96.7742
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	93.2836	93.1592	sus_scrofa_meishan	ENSSSCP00040010602	97.5293	97.3992
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	95.8955	94.0299	equus_caballus	ENSECAP00000062008	94.9507	93.1034
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	90.0498	86.4428	ovis_aries_rambouillet	ENSOARP00020031750	87.4396	83.9372
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	93.408	92.6617	sus_scrofa_largewhite	ENSSSCP00025006657	91.3625	90.6326
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	97.0149	97.0149	sus_scrofa_rongchang	ENSSSCP00030004107	96.7742	96.7742
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	93.0348	92.2886	sus_scrofa_landrace	ENSSSCP00045037640	89.2601	88.5442
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	99.7512	99.7512	sus_scrofa_bamei	ENSSSCP00050027909	99.7512	99.7512
ENSSSCG00065022432	sus_scrofa_berkshire	ENSSSCP00065012224	96.6418	95.1493	bos_taurus	ENSBTAP00000008431	99.6154	98.0769

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression